Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HZT45_RS16480 Genome accession   NZ_CP059318
Coordinates   3383915..3384604 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain BIOMA BV10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3378915..3389604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT45_RS16445 (HZT45_16445) - 3379113..3379595 (-) 483 WP_003151394.1 flagellar protein FlgN -
  HZT45_RS16450 (HZT45_16450) flgM 3379610..3379876 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HZT45_RS16455 (HZT45_16455) - 3379946..3380365 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  HZT45_RS16460 (HZT45_16460) comFC 3380439..3381128 (-) 690 WP_201756968.1 phosphoribosyltransferase family protein Machinery gene
  HZT45_RS16465 (HZT45_16465) - 3381134..3381418 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  HZT45_RS16470 (HZT45_16470) comFA 3381476..3382861 (-) 1386 WP_015240687.1 DEAD/DEAH box helicase Machinery gene
  HZT45_RS16475 (HZT45_16475) - 3382969..3383817 (-) 849 WP_003151387.1 DegV family protein -
  HZT45_RS16480 (HZT45_16480) degU 3383915..3384604 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HZT45_RS16485 (HZT45_16485) degS 3384681..3385844 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  HZT45_RS16490 (HZT45_16490) - 3386067..3386714 (+) 648 WP_007407485.1 YigZ family protein -
  HZT45_RS16495 (HZT45_16495) - 3386719..3387939 (+) 1221 WP_052827914.1 LCP family protein -
  HZT45_RS16500 (HZT45_16500) - 3388038..3389114 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=468552 HZT45_RS16480 WP_003219701.1 3383915..3384604(-) (degU) [Bacillus velezensis strain BIOMA BV10]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=468552 HZT45_RS16480 WP_003219701.1 3383915..3384604(-) (degU) [Bacillus velezensis strain BIOMA BV10]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1