Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HZT45_RS16460 Genome accession   NZ_CP059318
Coordinates   3380439..3381128 (-) Length   229 a.a.
NCBI ID   WP_201756968.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIOMA BV10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3375439..3386128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT45_RS16425 (HZT45_16425) fliW 3375529..3375960 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  HZT45_RS16430 (HZT45_16430) - 3375990..3376559 (-) 570 WP_007407476.1 DUF6470 family protein -
  HZT45_RS16435 (HZT45_16435) flgL 3376651..3377568 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  HZT45_RS16440 (HZT45_16440) flgK 3377580..3379097 (-) 1518 WP_052827912.1 flagellar hook-associated protein FlgK -
  HZT45_RS16445 (HZT45_16445) - 3379113..3379595 (-) 483 WP_003151394.1 flagellar protein FlgN -
  HZT45_RS16450 (HZT45_16450) flgM 3379610..3379876 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HZT45_RS16455 (HZT45_16455) - 3379946..3380365 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  HZT45_RS16460 (HZT45_16460) comFC 3380439..3381128 (-) 690 WP_201756968.1 phosphoribosyltransferase family protein Machinery gene
  HZT45_RS16465 (HZT45_16465) - 3381134..3381418 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  HZT45_RS16470 (HZT45_16470) comFA 3381476..3382861 (-) 1386 WP_015240687.1 DEAD/DEAH box helicase Machinery gene
  HZT45_RS16475 (HZT45_16475) - 3382969..3383817 (-) 849 WP_003151387.1 DegV family protein -
  HZT45_RS16480 (HZT45_16480) degU 3383915..3384604 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HZT45_RS16485 (HZT45_16485) degS 3384681..3385844 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25247.91 Da        Isoelectric Point: 8.2921

>NTDB_id=468550 HZT45_RS16460 WP_201756968.1 3380439..3381128(-) (comFC) [Bacillus velezensis strain BIOMA BV10]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSEMLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=468550 HZT45_RS16460 WP_201756968.1 3380439..3381128(-) (comFC) [Bacillus velezensis strain BIOMA BV10]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGATGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594