Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPF30_RS04990 Genome accession   NC_017365
Coordinates   1034111..1034515 (-) Length   134 a.a.
NCBI ID   WP_000599207.1    Uniprot ID   -
Organism   Helicobacter pylori F30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1029111..1039515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF30_RS04945 (HPF30_0952) - 1029142..1030260 (-) 1119 WP_000426637.1 hypothetical protein -
  HPF30_RS04950 (HPF30_0953) - 1030250..1031035 (-) 786 WP_000119833.1 hypothetical protein -
  HPF30_RS04955 (HPF30_0954) - 1031035..1031421 (-) 387 WP_000397433.1 DUF1294 domain-containing protein -
  HPF30_RS08455 (HPF30_0955) - 1031568..1031699 (-) 132 WP_269446447.1 hypothetical protein -
  HPF30_RS07920 (HPF30_0956) - 1031847..1032431 (-) 585 WP_014535223.1 glycoside hydrolase family protein -
  HPF30_RS04970 (HPF30_0957) - 1032442..1033002 (-) 561 WP_000038871.1 hypothetical protein -
  HPF30_RS04975 (HPF30_0958) - 1032986..1033324 (-) 339 WP_000699913.1 hypothetical protein -
  HPF30_RS08520 (HPF30_0959) - 1033512..1033772 (-) 261 WP_014535224.1 tetratricopeptide repeat protein -
  HPF30_RS08530 (HPF30_0960) - 1033820..1034053 (-) 234 WP_014535225.1 tetratricopeptide repeat protein -
  HPF30_RS04990 (HPF30_0961) dprB 1034111..1034515 (-) 405 WP_000599207.1 Holliday junction resolvase RuvX Machinery gene
  HPF30_RS04995 (HPF30_0962) dprA 1034512..1035312 (-) 801 WP_000840080.1 DNA-processing protein DprA Machinery gene
  HPF30_RS05000 (HPF30_0963) minE 1035324..1035557 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPF30_RS05005 (HPF30_0964) minD 1035554..1036360 (-) 807 WP_001019100.1 septum site-determining protein MinD -
  HPF30_RS05010 (HPF30_0965) ilvC 1036384..1037376 (-) 993 WP_014535226.1 ketol-acid reductoisomerase -
  HPF30_RS05020 (HPF30_0966) - 1037625..1038407 (+) 783 WP_001168229.1 NAD+ synthase -
  HPF30_RS05025 (HPF30_0967) - 1038404..1039342 (+) 939 WP_000833949.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15326.85 Da        Isoelectric Point: 8.7193

>NTDB_id=46852 HPF30_RS04990 WP_000599207.1 1034111..1034515(-) (dprB) [Helicobacter pylori F30]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=46852 HPF30_RS04990 WP_000599207.1 1034111..1034515(-) (dprB) [Helicobacter pylori F30]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955

Multiple sequence alignment