Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPLT_RS07090 | Genome accession | NC_017362 |
| Coordinates | 1449166..1449741 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203597.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Lithuania75 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1444166..1454741
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPLT_RS08895 (HPLT_07310) | - | 1445880..1446488 (-) | 609 | WP_412093561.1 | restriction endonuclease subunit S | - |
| HPLT_RS08900 (HPLT_07315) | - | 1446460..1447101 (-) | 642 | WP_000580122.1 | restriction endonuclease subunit S | - |
| HPLT_RS07085 (HPLT_07320) | - | 1447098..1449134 (-) | 2037 | WP_001045390.1 | N-6 DNA methylase | - |
| HPLT_RS07090 (HPLT_07325) | comFC | 1449166..1449741 (-) | 576 | WP_001203597.1 | ComF family protein | Machinery gene |
| HPLT_RS07095 (HPLT_07330) | tmk | 1449729..1450304 (-) | 576 | WP_000289700.1 | dTMP kinase | - |
| HPLT_RS07100 (HPLT_07335) | coaD | 1450306..1450779 (-) | 474 | WP_001169267.1 | pantetheine-phosphate adenylyltransferase | - |
| HPLT_RS07105 (HPLT_07340) | - | 1450779..1451342 (-) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| HPLT_RS07110 (HPLT_07350) | flgA | 1451352..1452008 (-) | 657 | WP_000706536.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPLT_RS07115 (HPLT_07355) | uvrD | 1452005..1454050 (-) | 2046 | WP_041200840.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21355.00 Da Isoelectric Point: 9.3045
>NTDB_id=46839 HPLT_RS07090 WP_001203597.1 1449166..1449741(-) (comFC) [Helicobacter pylori Lithuania75]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANHPRNFKFKGDESLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANHPRNFKFKGDESLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=46839 HPLT_RS07090 WP_001203597.1 1449166..1449741(-) (comFC) [Helicobacter pylori Lithuania75]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCCCTTTGCCCAAATTGCTTGAACGATTTACCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCTTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGAATTTTAAATTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCCCTTTGCCCAAATTGCTTGAACGATTTACCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCTTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGAATTTTAAATTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |