Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HPLT_RS00225 | Genome accession | NC_017362 |
| Coordinates | 39515..40651 (+) | Length | 378 a.a. |
| NCBI ID | WP_001045898.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Lithuania75 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34515..45651
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPLT_RS00190 (HPLT_00170) | panD | 34959..35312 (+) | 354 | WP_000142223.1 | aspartate 1-decarboxylase | - |
| HPLT_RS00195 (HPLT_00175) | - | 35315..35617 (+) | 303 | WP_000347930.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPLT_RS00200 (HPLT_00180) | - | 35617..36621 (+) | 1005 | WP_000468482.1 | PDZ domain-containing protein | - |
| HPLT_RS00205 | - | 36629..37685 (+) | 1057 | Protein_35 | type IV secretion system protein | - |
| HPLT_RS08590 (HPLT_00195) | comB7 | 37701..37814 (+) | 114 | WP_001217848.1 | hypothetical protein | Machinery gene |
| HPLT_RS00215 (HPLT_00200) | comB8 | 37811..38554 (+) | 744 | WP_000660510.1 | type IV secretion system protein | Machinery gene |
| HPLT_RS00220 (HPLT_00205) | comB9 | 38554..39522 (+) | 969 | WP_014534909.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPLT_RS00225 (HPLT_00210) | comB10 | 39515..40651 (+) | 1137 | WP_001045898.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPLT_RS00230 (HPLT_00215) | - | 40721..42139 (+) | 1419 | WP_000694867.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPLT_RS00235 (HPLT_00220) | gmd | 42149..43294 (+) | 1146 | WP_000659823.1 | GDP-mannose 4,6-dehydratase | - |
| HPLT_RS00240 (HPLT_00225) | - | 43287..44219 (+) | 933 | WP_001002501.1 | GDP-L-fucose synthase family protein | - |
| HPLT_RS00245 (HPLT_00235) | hypE | 44533..45531 (-) | 999 | WP_000378761.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42303.93 Da Isoelectric Point: 9.8254
>NTDB_id=46828 HPLT_RS00225 WP_001045898.1 39515..40651(+) (comB10) [Helicobacter pylori Lithuania75]
MNKWLKGVLVFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDVTIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGVLVFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDVTIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=46828 HPLT_RS00225 WP_001045898.1 39515..40651(+) (comB10) [Helicobacter pylori Lithuania75]
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGTTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATCGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTCTCATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAGGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGTTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTACTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGAGGTAACTAATTTCTTTGGAGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCCATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGTTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATCGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTCTCATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAGGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGTTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTACTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGAGGTAACTAATTTCTTTGGAGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCCATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.354 |
100 |
0.974 |