Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPLT_RS00215 Genome accession   NC_017362
Coordinates   37811..38554 (+) Length   247 a.a.
NCBI ID   WP_000660510.1    Uniprot ID   -
Organism   Helicobacter pylori Lithuania75     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32811..43554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPLT_RS00190 (HPLT_00170) panD 34959..35312 (+) 354 WP_000142223.1 aspartate 1-decarboxylase -
  HPLT_RS00195 (HPLT_00175) - 35315..35617 (+) 303 WP_000347930.1 YbaB/EbfC family nucleoid-associated protein -
  HPLT_RS00200 (HPLT_00180) - 35617..36621 (+) 1005 WP_000468482.1 PDZ domain-containing protein -
  HPLT_RS00205 - 36629..37685 (+) 1057 Protein_35 type IV secretion system protein -
  HPLT_RS08590 (HPLT_00195) comB7 37701..37814 (+) 114 WP_001217848.1 hypothetical protein Machinery gene
  HPLT_RS00215 (HPLT_00200) comB8 37811..38554 (+) 744 WP_000660510.1 type IV secretion system protein Machinery gene
  HPLT_RS00220 (HPLT_00205) comB9 38554..39522 (+) 969 WP_014534909.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPLT_RS00225 (HPLT_00210) comB10 39515..40651 (+) 1137 WP_001045898.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPLT_RS00230 (HPLT_00215) - 40721..42139 (+) 1419 WP_000694867.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPLT_RS00235 (HPLT_00220) gmd 42149..43294 (+) 1146 WP_000659823.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28708.96 Da        Isoelectric Point: 8.9546

>NTDB_id=46826 HPLT_RS00215 WP_000660510.1 37811..38554(+) (comB8) [Helicobacter pylori Lithuania75]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=46826 HPLT_RS00215 WP_000660510.1 37811..38554(+) (comB8) [Helicobacter pylori Lithuania75]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATTTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGATATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGCATTCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTGAACCGAGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTTCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

98.381

100

0.984

Multiple sequence alignment