Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HZY77_RS06590 Genome accession   NZ_CP059257
Coordinates   1329306..1329971 (+) Length   221 a.a.
NCBI ID   WP_296819964.1    Uniprot ID   -
Organism   MAG: Thiobacillus sp. isolate SSC5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324306..1334971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZY77_RS06560 (HZY77_06550) nadC 1324661..1325500 (+) 840 Protein_1295 carboxylating nicotinate-nucleotide diphosphorylase -
  HZY77_RS06565 (HZY77_06555) - 1325524..1325994 (+) 471 WP_296819956.1 GNAT family N-acetyltransferase -
  HZY77_RS06570 (HZY77_06560) - 1325982..1326833 (+) 852 WP_296819958.1 DNA ligase -
  HZY77_RS06575 (HZY77_06565) - 1326836..1327420 (-) 585 WP_296819960.1 TMEM175 family protein -
  HZY77_RS06580 (HZY77_06570) pgeF 1327490..1328157 (-) 668 Protein_1299 peptidoglycan editing factor PgeF -
  HZY77_RS06585 (HZY77_06575) rluD 1328205..1329182 (-) 978 WP_296819962.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HZY77_RS06590 (HZY77_06580) comL 1329306..1329971 (+) 666 WP_296819964.1 outer membrane protein assembly factor BamD Machinery gene
  HZY77_RS06595 (HZY77_06585) - 1330058..1330387 (-) 330 WP_296820851.1 P-II family nitrogen regulator -
  HZY77_RS06600 (HZY77_06590) - 1330391..1331999 (-) 1609 Protein_1303 NAD+ synthase -
  HZY77_RS06605 (HZY77_06595) sucD 1332009..1332883 (-) 875 Protein_1304 succinate--CoA ligase subunit alpha -
  HZY77_RS06610 (HZY77_06600) sucC 1332990..1334149 (-) 1160 Protein_1305 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24878.24 Da        Isoelectric Point: 7.3464

>NTDB_id=468171 HZY77_RS06590 WP_296819964.1 1329306..1329971(+) (comL) [MAG: Thiobacillus sp. isolate SSC5]
MVGAKLYSEAKDNLNSGNYERAVKLFETLEARYPFGRYAQQAQLEVGYAYYKDNEPISAIAACDRFIKLHPNHPNVDYAY
YLKGLANFNDDLGLLGNLVDQDMSERDPKAARDAFLAFKELVTRFPDSKYAEDSTARMKYLVNALAGNEVHVARYYLKRK
AWVAAANRAKVVLTDYPQAPALEEALGIMVVAYDNLHLTGPRDDALRVLKLNFPTANISRA

Nucleotide


Download         Length: 666 bp        

>NTDB_id=468171 HZY77_RS06590 WP_296819964.1 1329306..1329971(+) (comL) [MAG: Thiobacillus sp. isolate SSC5]
TTGGTCGGCGCAAAACTCTACTCCGAAGCCAAGGATAATCTCAACAGCGGCAACTACGAACGCGCGGTCAAATTGTTCGA
AACGCTGGAAGCGCGTTACCCCTTCGGACGTTATGCACAGCAGGCGCAACTGGAAGTGGGTTACGCCTACTACAAGGACA
ACGAACCGATTTCAGCCATTGCCGCATGCGATCGTTTCATCAAGCTGCACCCCAATCACCCTAACGTCGATTACGCCTAC
TATCTTAAGGGCCTGGCGAATTTTAACGACGATCTGGGACTGCTCGGCAACCTGGTCGACCAGGACATGAGCGAACGTGA
TCCCAAGGCTGCGCGCGATGCGTTCCTGGCATTCAAGGAACTGGTCACCCGCTTCCCCGACAGCAAATATGCCGAGGACT
CGACCGCCCGCATGAAATACCTGGTCAACGCGCTGGCTGGCAACGAGGTCCATGTCGCCCGGTATTACCTGAAACGCAAA
GCCTGGGTGGCTGCCGCCAACCGTGCCAAGGTCGTGCTGACTGACTACCCTCAGGCTCCCGCGCTGGAAGAGGCACTGGG
CATCATGGTCGTGGCCTACGACAATCTGCACCTCACGGGACCGCGCGACGATGCGCTGCGGGTGCTGAAGCTCAACTTCC
CCACAGCAAATATCTCAAGGGCGTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(4-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

57.075

95.928

0.548
  comL Neisseria gonorrhoeae MS11

56.604

95.928

0.543