Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6J38_RS06245 Genome accession   NZ_CP069558
Coordinates   1267201..1268472 (+) Length   423 a.a.
NCBI ID   WP_006268554.1    Uniprot ID   F9P7T9
Organism   Streptococcus constellatus strain FDAARGOS_1208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1262201..1273472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J38_RS06215 (I6J38_06215) - 1263643..1263789 (-) 147 WP_006268140.1 hypothetical protein -
  I6J38_RS06220 (I6J38_06220) - 1263956..1264696 (-) 741 WP_020998051.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  I6J38_RS06225 (I6J38_06225) prmA 1264697..1265650 (-) 954 WP_006267983.1 50S ribosomal protein L11 methyltransferase -
  I6J38_RS06230 (I6J38_06230) - 1265666..1266136 (-) 471 WP_006268202.1 GNAT family N-acetyltransferase -
  I6J38_RS06235 (I6J38_06235) - 1266133..1266579 (-) 447 WP_006268439.1 NUDIX hydrolase -
  I6J38_RS06240 (I6J38_06240) - 1266629..1267099 (-) 471 WP_003037612.1 DUF3013 family protein -
  I6J38_RS06245 (I6J38_06245) rarA 1267201..1268472 (+) 1272 WP_006268554.1 replication-associated recombination protein A Machinery gene
  I6J38_RS06255 (I6J38_06255) - 1268899..1270026 (-) 1128 WP_000323398.1 tyrosine-type recombinase/integrase -
  I6J38_RS06260 (I6J38_06260) - 1270027..1270209 (-) 183 WP_000655516.1 DUF3173 domain-containing protein -
  I6J38_RS06265 (I6J38_06265) - 1270225..1271268 (-) 1044 WP_022525719.1 hypothetical protein -
  I6J38_RS06270 (I6J38_06270) - 1271392..1271655 (-) 264 WP_022525718.1 hypothetical protein -
  I6J38_RS06275 (I6J38_06275) - 1271804..1273135 (-) 1332 WP_006268259.1 FtsK/SpoIIIE domain-containing protein -
  I6J38_RS06280 (I6J38_06280) - 1273139..1273354 (-) 216 WP_037592756.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46829.33 Da        Isoelectric Point: 6.5107

>NTDB_id=468148 I6J38_RS06245 WP_006268554.1 1267201..1268472(+) (rarA) [Streptococcus constellatus strain FDAARGOS_1208]
MPDNLAIRMRPKNINQVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLTNDDIKQAIQ
TALTDTERGFDFPVQLDDDALDFIATSTNGDLRSAFNSLDLAVLSTQADHAGVRHITLDIMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANIV
IDLALSPKSNSAYVAIDKALSDLRQNGNLAIPRHLRDGHYVGSKELGNAQDYKYPHNYPGNWVKQDYLPEKIKYADYFIP
NENGKYERALGMTKNKIDQLKNN

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=468148 I6J38_RS06245 WP_006268554.1 1267201..1268472(+) (rarA) [Streptococcus constellatus strain FDAARGOS_1208]
ATGCCAGACAATTTAGCGATTCGCATGCGGCCTAAAAATATCAATCAGGTCATCGGTCAGAAACATCTGGTCGGTGAAGG
AAAAATCATTCGTCGCATGGTGGAAGCCAATCGCCTGTCTTCCATGATTCTCTATGGTCCGCCAGGGATTGGCAAGACTT
CAATTGCTTCGGCTATTGCCGGAACTACCAAATTTGCTTTTCGGACCTTTAATGCTACTGTTGATAGTAAGAAGCGTCTG
CAAGAGATTGCGGAAGAAGCCAAATTCTCTGGTGGTTTGGTGCTGCTGTTAGACGAGATTCATCGCTTGGACAAGACCAA
ACAGGACTTCCTCCTACCGCTCTTGGAAAACGGTCTGGTCATCATGATTGGCGCCACAACAGAAAATCCCTTTTTCTCCG
TCACTCCCGCTATTCGCAGCCGAGTACAAATTTTCGAGTTGGAACCTCTGACAAATGATGATATTAAACAAGCCATTCAA
ACAGCCCTGACGGATACCGAACGAGGTTTTGATTTTCCTGTCCAGCTAGATGATGACGCTCTGGATTTCATTGCCACTTC
CACGAATGGAGATCTGCGCTCAGCCTTTAATTCTCTAGATTTAGCAGTTCTCTCTACCCAAGCGGATCATGCAGGTGTTC
GCCATATCACTCTGGATATTATGGAAAACAGCCTGCAAAAGAGCTACATCACTATGGACAAAGACGGAGACGGTCACTAT
GACGTCCTGTCCGCTTTACAGAAGTCTATTCGCGGGTCTGATGTCAATGCCAGTCTCCATTATGCAGCTCGCTTGATTGA
AGCTGGAGACCTTCCCAGTCTCGCACGACGCCTGACAGTCATTGCTTATGAAGACATTGGTTTGGCAAATCCCGATGCTC
AGATTCATACAGTGACCGCACTTGAAGCCGCTCAAAAAATTGGGTTCCCAGAAGCTCGCATCCTCATTGCCAACATTGTC
ATTGACCTAGCACTTTCTCCTAAGTCCAACTCGGCCTACGTAGCCATAGACAAAGCACTCTCTGACTTGCGCCAGAACGG
AAATCTCGCTATCCCCCGTCATCTACGAGACGGTCATTACGTCGGAAGCAAGGAGCTGGGAAATGCGCAGGATTACAAAT
ATCCACATAACTATCCTGGTAACTGGGTGAAACAAGATTATCTTCCTGAAAAAATAAAATATGCCGATTATTTCATTCCA
AATGAAAATGGAAAGTATGAACGAGCCCTTGGCATGACTAAAAATAAGATTGATCAATTAAAAAACAACTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P7T9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.809

98.818

0.591