Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   HS056_RS08295 Genome accession   NZ_CP059242
Coordinates   1627537..1628094 (+) Length   185 a.a.
NCBI ID   WP_240020782.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0005     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1622537..1633094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS056_RS08265 (HS056_08200) - 1622758..1623565 (+) 808 Protein_1576 metal ABC transporter permease -
  HS056_RS08270 (HS056_08205) - 1623622..1624365 (-) 744 WP_240020776.1 metal ABC transporter ATP-binding protein -
  HS056_RS08275 (HS056_08210) - 1624378..1625274 (-) 897 WP_006251769.1 metal ABC transporter substrate-binding protein -
  HS056_RS08280 (HS056_08215) - 1625534..1626694 (+) 1161 Protein_1579 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  HS056_RS08285 (HS056_08220) - 1626735..1627082 (-) 348 WP_006251771.1 helix-turn-helix domain-containing protein -
  HS056_RS08290 (HS056_08225) - 1627066..1627317 (-) 252 WP_006251772.1 type II toxin-antitoxin system RelE/ParE family toxin -
  HS056_RS08295 (HS056_08230) pilF 1627537..1628094 (+) 558 WP_240020782.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  HS056_RS08300 (HS056_08235) - 1628094..1630418 (+) 2325 WP_409038866.1 Tex family protein -
  HS056_RS08305 (HS056_08240) - 1630490..1631053 (-) 564 WP_006249720.1 nitroreductase family protein -
  HS056_RS08310 (HS056_08245) sppA 1631156..1633015 (+) 1860 WP_409038867.1 signal peptide peptidase SppA -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21077.26 Da        Isoelectric Point: 6.4644

>NTDB_id=468080 HS056_RS08295 WP_240020782.1 1627537..1628094(+) (pilF) [Mannheimia haemolytica strain 0005]
MFAKFFPKMTACILIFLLAACSSLPPSSSEVEFNRSEAVKARINLALAYLEQNDFPKAKQNIDKALAHDEXKDYLPYSVL
AYYYQQTGDAENAEKAYQTALKLSQNRPDVLNNYGTFLCKQGQFQQAYQQFEQAVKSKAPYYHQADSLENMVLCAXKEPN
LXKIAETLTELEKLDKPRANLLKEN

Nucleotide


Download         Length: 558 bp        

>NTDB_id=468080 HS056_RS08295 WP_240020782.1 1627537..1628094(+) (pilF) [Mannheimia haemolytica strain 0005]
ATGTTTGCAAAATTTTTTCCNAAAATGACCGCTTGTATTCTGATTTTTTTATTAGCGGCTTGTTCTTCTCTTCCCCCTTC
TTCCTCTGAAGTCGAATTTAACCGCTCGGAAGCGGTAAAAGCCCGTATTAATTTGGCTTTAGCTTATCTGGAGCAAAATG
ATTTCCCAAAAGCTAAGCAGAATATTGATAAAGCCTTGGCTCACGATGAANNAAAAGATTACCTCCCTTATTCGGTGCTT
GCCTATTATTACCAACAAACAGGTGATGCTGAAAATGCCGAAAAAGCCTACCAAACGGCACTGAAATTGAGTCAAAACCG
CCCTGATGTGCTGAATAATTACGGCACTTTTTTATGTAAACAGGGTCAATTTCAACAGGCTTATCAGCAATTTGAGCAGG
CTGTCAAAAGCAAAGCACCCTACTATCACCAAGCGGATAGCTTAGAAAATATGGTGTTATGTGCGAANAAAGAGCCGAAT
CTGCANAAAATTGCCGAAACATTGACCGAGCTTGAGAAATTGGATAAACCTCGAGCAAATTTATTGAAGGAAAACTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(96-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

63.298

100

0.643
  pilF/pilF2 Haemophilus influenzae Rd KW20

47.674

92.973

0.443