Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HMPREF4655_RS02775 Genome accession   NC_017360
Coordinates   558720..559124 (+) Length   134 a.a.
NCBI ID   WP_000599161.1    Uniprot ID   -
Organism   Helicobacter pylori 35A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 553720..564124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF4655_RS02740 (HMPREF4655_20571) - 553899..554837 (-) 939 WP_000833960.1 tetraacyldisaccharide 4'-kinase -
  HMPREF4655_RS02745 (HMPREF4655_20572) - 554834..555616 (-) 783 WP_001168214.1 NAD+ synthase -
  HMPREF4655_RS02755 (HMPREF4655_20573) ilvC 555864..556856 (+) 993 WP_001207776.1 ketol-acid reductoisomerase -
  HMPREF4655_RS02760 (HMPREF4655_20574) minD 556875..557681 (+) 807 WP_001019098.1 septum site-determining protein MinD -
  HMPREF4655_RS02765 (HMPREF4655_20575) minE 557678..557911 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HMPREF4655_RS02770 (HMPREF4655_20576) dprA 557923..558723 (+) 801 WP_000840090.1 DNA-processing protein DprA Machinery gene
  HMPREF4655_RS02775 (HMPREF4655_20577) dprB 558720..559124 (+) 405 WP_000599161.1 Holliday junction resolvase RuvX Machinery gene
  HMPREF4655_RS02780 (HMPREF4655_20578) - 559236..559466 (+) 231 WP_147588954.1 tetratricopeptide repeat protein -
  HMPREF4655_RS02785 (HMPREF4655_20579) - 559655..559993 (+) 339 WP_000699916.1 hypothetical protein -
  HMPREF4655_RS02790 (HMPREF4655_20580) - 559977..560537 (+) 561 WP_000037143.1 hypothetical protein -
  HMPREF4655_RS08290 - 560548..560715 (+) 168 WP_080005298.1 lysozyme -
  HMPREF4655_RS08525 - 560937..561204 (+) 268 Protein_546 lysozyme -
  HMPREF4655_RS02805 (HMPREF4655_20584) - 561254..561409 (+) 156 WP_014534571.1 hypothetical protein -
  HMPREF4655_RS02810 (HMPREF4655_20585) - 561547..561933 (+) 387 WP_000397545.1 DUF1294 domain-containing protein -
  HMPREF4655_RS02815 (HMPREF4655_20586) - 561933..562718 (+) 786 WP_000119816.1 hypothetical protein -
  HMPREF4655_RS02820 (HMPREF4655_20587) - 562708..563796 (+) 1089 WP_000426620.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15309.84 Da        Isoelectric Point: 9.5494

>NTDB_id=46793 HMPREF4655_RS02775 WP_000599161.1 558720..559124(+) (dprB) [Helicobacter pylori 35A]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLTIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=46793 HMPREF4655_RS02775 WP_000599161.1 558720..559124(+) (dprB) [Helicobacter pylori 35A]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CACTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955

Multiple sequence alignment