Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HMPREF4655_RS00320 | Genome accession | NC_017360 |
| Coordinates | 62618..63193 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203649.1 | Uniprot ID | - |
| Organism | Helicobacter pylori 35A | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57618..68193
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF4655_RS08565 | - | 59335..59892 (-) | 558 | WP_407918598.1 | restriction endonuclease subunit S | - |
| HMPREF4655_RS08570 | - | 59881..60559 (-) | 679 | Protein_62 | restriction endonuclease subunit S | - |
| HMPREF4655_RS00315 (HMPREF4655_20069) | - | 60556..62585 (-) | 2030 | Protein_63 | N-6 DNA methylase | - |
| HMPREF4655_RS00320 (HMPREF4655_20071) | comFC | 62618..63193 (-) | 576 | WP_001203649.1 | ComF family protein | Machinery gene |
| HMPREF4655_RS00325 (HMPREF4655_20072) | tmk | 63181..63756 (-) | 576 | WP_000289757.1 | dTMP kinase | - |
| HMPREF4655_RS00330 (HMPREF4655_20073) | coaD | 63758..64231 (-) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| HMPREF4655_RS00335 (HMPREF4655_20074) | - | 64231..64794 (-) | 564 | WP_000780134.1 | UbiX family flavin prenyltransferase | - |
| HMPREF4655_RS00340 (HMPREF4655_20075) | flgA | 64804..65460 (-) | 657 | WP_000697655.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HMPREF4655_RS00345 (HMPREF4655_20076) | uvrD | 65457..67502 (-) | 2046 | WP_000345194.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21242.87 Da Isoelectric Point: 9.1280
>NTDB_id=46783 HMPREF4655_RS00320 WP_001203649.1 62618..63193(-) (comFC) [Helicobacter pylori 35A]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LITPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNTISYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNAKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LITPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNTISYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNAKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=46783 HMPREF4655_RS00320 WP_001203649.1 62618..63193(-) (comFC) [Helicobacter pylori 35A]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCTCAAATTGCTTGAACGATTTGCCCTTAAGCCTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTAATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGATTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACGCAAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCTCAAATTGCTTGAACGATTTGCCCTTAAGCCTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTAATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGATTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACGCAAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |