Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPSAT_RS06910 | Genome accession | NC_017359 |
| Coordinates | 1417243..1417818 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203567.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Sat464 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1412243..1422818
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSAT_RS06900 (HPSAT_07075) | - | 1414533..1415174 (-) | 642 | WP_000580123.1 | restriction endonuclease subunit S | - |
| HPSAT_RS06905 (HPSAT_07080) | - | 1415171..1417210 (-) | 2040 | WP_001147676.1 | class I SAM-dependent DNA methyltransferase | - |
| HPSAT_RS06910 (HPSAT_07085) | comFC | 1417243..1417818 (-) | 576 | WP_001203567.1 | ComF family protein | Machinery gene |
| HPSAT_RS06915 (HPSAT_07090) | tmk | 1417806..1418381 (-) | 576 | WP_000289770.1 | dTMP kinase | - |
| HPSAT_RS06920 (HPSAT_07095) | coaD | 1418383..1418856 (-) | 474 | WP_014534473.1 | pantetheine-phosphate adenylyltransferase | - |
| HPSAT_RS06925 (HPSAT_07100) | - | 1418856..1419419 (-) | 564 | WP_000780095.1 | UbiX family flavin prenyltransferase | - |
| HPSAT_RS06930 (HPSAT_07110) | flgA | 1419429..1420085 (-) | 657 | WP_000697667.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPSAT_RS06935 (HPSAT_07115) | uvrD | 1420082..1422127 (-) | 2046 | WP_000345177.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21248.82 Da Isoelectric Point: 9.0940
>NTDB_id=46780 HPSAT_RS06910 WP_001203567.1 1417243..1417818(-) (comFC) [Helicobacter pylori Sat464]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAANAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNAKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAANAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNAKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=46780 HPSAT_RS06910 WP_001203567.1 1417243..1417818(-) (comFC) [Helicobacter pylori Sat464]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACGCCAAAGTGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACGCCAAAGTGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |