Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   H0I86_RS29605 Genome accession   NZ_CP059162
Coordinates   6457805..6458212 (-) Length   135 a.a.
NCBI ID   WP_180923142.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain YS05     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6452805..6463212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0I86_RS29590 (H0I86_29590) - 6454684..6456747 (-) 2064 WP_180923141.1 methyl-accepting chemotaxis protein -
  H0I86_RS29595 (H0I86_29595) - 6456845..6457384 (-) 540 WP_038575084.1 chemotaxis protein CheW -
  H0I86_RS29600 (H0I86_29600) pilH 6457396..6457761 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  H0I86_RS29605 (H0I86_29605) pilG 6457805..6458212 (-) 408 WP_180923142.1 twitching motility response regulator PilG Regulator
  H0I86_RS29610 (H0I86_29610) gshB 6458449..6459405 (+) 957 WP_180923143.1 glutathione synthase -
  H0I86_RS29615 (H0I86_29615) - 6459506..6460405 (+) 900 WP_180923144.1 energy transducer TonB -
  H0I86_RS29620 (H0I86_29620) - 6460459..6461028 (+) 570 WP_007929972.1 YqgE/AlgH family protein -
  H0I86_RS29625 (H0I86_29625) ruvX 6461028..6461465 (+) 438 WP_180923145.1 Holliday junction resolvase RuvX -
  H0I86_RS29630 (H0I86_29630) pyrR 6461587..6462093 (+) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  H0I86_RS29635 (H0I86_29635) - 6462120..6463124 (+) 1005 WP_007929978.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14651.03 Da        Isoelectric Point: 7.2445

>NTDB_id=467611 H0I86_RS29605 WP_180923142.1 6457805..6458212(-) (pilG) [Pseudomonas chlororaphis subsp. aurantiaca strain YS05]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFEALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLGAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=467611 H0I86_RS29605 WP_180923142.1 6457805..6458212(-) (pilG) [Pseudomonas chlororaphis subsp. aurantiaca strain YS05]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGCTGCT
GAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGGCCCTGGCCAAGATCGCCGACAACCACCCGGGCA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCGCTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGGGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385