Detailed information NTG0467607

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: H0I86_RS27215
• Genome accession: NZ_CP059162
• Coordinates: 5953312..5954640 (+)
• Length: 442 a.a.
• NCBI ID: WP_180922847.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain YS05
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5948312..5959640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0I86_RS27195 (H0I86_27195)	pgeF	5949802..5950527 (-)	726	WP_180922846.1	peptidoglycan editing factor PgeF	-
H0I86_RS27200 (H0I86_27200)	rluD	5950524..5951486 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
H0I86_RS27205 (H0I86_27205)	-	5951639..5952661 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
H0I86_RS27210 (H0I86_27210)	-	5952795..5953028 (+)	234	WP_007924721.1	PP0621 family protein	-
H0I86_RS27215 (H0I86_27215)	pilR	5953312..5954640 (+)	1329	WP_180922847.1	sigma-54 dependent transcriptional regulator	Regulator
H0I86_RS27220 (H0I86_27220)	thiO	5954637..5955737 (-)	1101	WP_180922848.1	glycine oxidase ThiO	-
H0I86_RS27225 (H0I86_27225)	-	5955792..5956193 (-)	402	WP_009050937.1	type IV pilin protein	-
H0I86_RS27230 (H0I86_27230)	-	5956207..5959278 (-)	3072	WP_180922849.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48698.08 Da
• Isoelectric Point: 8.7202

>NTDB_id=467607 H0I86_RS27215 WP_180922847.1 5953312..5954640(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain YS05]
MGPRQKILIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGALPGSAPANPATGPLLGDSTSMHKLRVQIGKLAQSQASVYIS
GESGSGKELVARAIHDQGPRASRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=467607 H0I86_RS27215 WP_180922847.1 5953312..5954640(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain YS05]
ATGGGCCCACGGCAAAAAATCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGTCTGGAATTACTCGAGCATATACAGCGCCATCGGCTGCGAATGCCGCTGGCC
ATCCTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAAGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGTGAGCTGTTGAATGGCGCCCTGCCCGGATCGGCACCAGCGAACCCTGCTACCGGCCCACTGC
TCGGCGATTCGACCTCCATGCATAAACTGCGCGTGCAGATCGGTAAGCTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAGCTGGTCGCTCGCGCGATCCACGACCAGGGACCACGGGCCAGCCGGGCCTTCGTGCC
GATCAACTGCGGGGCCATTCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCATGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAAGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAGCTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAATGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCGCTTCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCATCGCGCCCGGCCCTGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTCCGTTCGATGCGCTACAGACTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.72	100	0.679
pilR	Acinetobacter baumannii strain A118	43.791	100	0.455