Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H0I86_RS08765 Genome accession   NZ_CP059162
Coordinates   1924828..1925463 (+) Length   211 a.a.
NCBI ID   WP_180924716.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain YS05     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1919828..1930463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0I86_RS08745 (H0I86_08745) - 1920071..1921003 (+) 933 WP_150085131.1 ABC transporter ATP-binding protein -
  H0I86_RS08750 (H0I86_08750) - 1921000..1921779 (+) 780 WP_007931651.1 ABC transporter permease -
  H0I86_RS08755 (H0I86_08755) - 1921830..1922345 (-) 516 WP_025804355.1 DUF2062 domain-containing protein -
  H0I86_RS08760 (H0I86_08760) comA 1922494..1924725 (+) 2232 WP_180924715.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H0I86_RS08765 (H0I86_08765) exbB 1924828..1925463 (+) 636 WP_180924716.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H0I86_RS08770 (H0I86_08770) - 1925460..1925888 (+) 429 WP_180924717.1 biopolymer transporter ExbD -
  H0I86_RS08775 (H0I86_08775) lpxK 1925888..1926898 (+) 1011 WP_180924718.1 tetraacyldisaccharide 4'-kinase -
  H0I86_RS08780 (H0I86_08780) - 1926922..1927107 (+) 186 WP_007931663.1 Trm112 family protein -
  H0I86_RS08785 (H0I86_08785) kdsB 1927104..1927868 (+) 765 WP_180924719.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H0I86_RS08790 (H0I86_08790) - 1927868..1928332 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  H0I86_RS08795 (H0I86_08795) murB 1928329..1929348 (+) 1020 WP_180924720.1 UDP-N-acetylmuramate dehydrogenase -
  H0I86_RS08800 (H0I86_08800) - 1929597..1930067 (+) 471 WP_180924721.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22917.10 Da        Isoelectric Point: 8.1069

>NTDB_id=467598 H0I86_RS08765 WP_180924716.1 1924828..1925463(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain YS05]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTGNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=467598 H0I86_RS08765 WP_180924716.1 1924828..1925463(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain YS05]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCACATCTGCTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAGCTGCGTGCCCATTCGCCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAGTGCATCGAGGAAGCCGCTGCCCGGGTCATCCATGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCGGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867