Detailed information NTG0467597

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: H0I86_RS08760
• Genome accession: NZ_CP059162
• Coordinates: 1922494..1924725 (+)
• Length: 743 a.a.
• NCBI ID: WP_180924715.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain YS05
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1917494..1929725

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0I86_RS08735 (H0I86_08735)	-	1918613..1919272 (+)	660	WP_180924714.1	transglutaminase family protein	-
H0I86_RS08740 (H0I86_08740)	-	1919315..1919938 (+)	624	WP_150085130.1	glutathione S-transferase family protein	-
H0I86_RS08745 (H0I86_08745)	-	1920071..1921003 (+)	933	WP_150085131.1	ABC transporter ATP-binding protein	-
H0I86_RS08750 (H0I86_08750)	-	1921000..1921779 (+)	780	WP_007931651.1	ABC transporter permease	-
H0I86_RS08755 (H0I86_08755)	-	1921830..1922345 (-)	516	WP_025804355.1	DUF2062 domain-containing protein	-
H0I86_RS08760 (H0I86_08760)	comA	1922494..1924725 (+)	2232	WP_180924715.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
H0I86_RS08765 (H0I86_08765)	exbB	1924828..1925463 (+)	636	WP_180924716.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
H0I86_RS08770 (H0I86_08770)	-	1925460..1925888 (+)	429	WP_180924717.1	biopolymer transporter ExbD	-
H0I86_RS08775 (H0I86_08775)	lpxK	1925888..1926898 (+)	1011	WP_180924718.1	tetraacyldisaccharide 4'-kinase	-
H0I86_RS08780 (H0I86_08780)	-	1926922..1927107 (+)	186	WP_007931663.1	Trm112 family protein	-
H0I86_RS08785 (H0I86_08785)	kdsB	1927104..1927868 (+)	765	WP_180924719.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
H0I86_RS08790 (H0I86_08790)	-	1927868..1928332 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
H0I86_RS08795 (H0I86_08795)	murB	1928329..1929348 (+)	1020	WP_180924720.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81501.58 Da
• Isoelectric Point: 9.9471

>NTDB_id=467597 H0I86_RS08760 WP_180924715.1 1922494..1924725(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain YS05]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACMSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGWARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWIAPAIPFWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVERLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCASDEQWQWDGVRFALWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSPALLKVLAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAQHGALRLML
GSYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=467597 H0I86_RS08760 WP_180924715.1 1922494..1924725(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain YS05]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGCTGCCGGTAGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCATGAGCGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGACGGACAGACCCGCTGGCTTGAGGGC
CGGGTGGTGGGACTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGTGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAGCTCA
AGCGCCCTGCTGGGCTGGTCAATCTGCAGGCTTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGT
ACGGTCAAGGATGGGCAACTGCTGGCCGCCACGCAGGAGAGTTGGCGTGCGCGTATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCCGTGATGTATGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTCGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGGGCCTGGTGGCCGTTTCTGCTGGCGTTGAATACGGTACTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGATTCTGGCTGTCCTTTACTGCGGTGGCGGTACTGATTCTGATCTTTGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGCTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGTTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGTTGCCGCCGGCGTTG
CTCGGGACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTGCTGTT
CCGCGGTCTGGCGCTGCTGGCTGCCCAATGGCCGGCCTGGATAGCGCCGGCCATACCGTTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGCTGTTGCTGCCCGCGGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAAAAACACCCTGCCATACGGCGAAGCGGAGGTCTGGCAGCTGGATGTCGGGCAGGGGCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGCGACTCCGACTTGGGCGCCCGGGTAGTGCTGC
CATCGTTGCGCAAGCTGGGCGTCGAGCGCCTCGACCTGATGCTGCTCAGCCACGCGGATGCCGACCATGCCGGTGGCGCC
GATGCCGTCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGACGAGCAATGGCAATGGGACGGGGTACGTTTTGCCCTGTGGCAATGGGCGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCAGGCGGAA
CGCGCGCTGTTGAATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCACACCACGGCAGCCGTAGCTCGTCGTC
CCCAGCCCTGCTCAAGGTCCTTGCGCCTTCGGCGGTGCTGATTTCCCGGGGCCACGGCAACGGCTTCGGGCACCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGCAGCACGGAGCGCTGCGGTTGATGCTG
GGCTCCTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.395	96.77	0.623