Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPCU_RS07255 | Genome accession | NC_017358 |
| Coordinates | 1493032..1493607 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203650.1 | Uniprot ID | A0AB32X9Q0 |
| Organism | Helicobacter pylori Cuz20 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1488032..1498607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPCU_RS07245 (HPCU_07415) | - | 1489788..1490963 (-) | 1176 | WP_000580073.1 | restriction endonuclease subunit S | - |
| HPCU_RS07250 (HPCU_07420) | - | 1490960..1492999 (-) | 2040 | WP_001147679.1 | class I SAM-dependent DNA methyltransferase | - |
| HPCU_RS07255 (HPCU_07425) | comFC | 1493032..1493607 (-) | 576 | WP_001203650.1 | ComF family protein | Machinery gene |
| HPCU_RS07260 (HPCU_07430) | tmk | 1493595..1494170 (-) | 576 | WP_000289750.1 | dTMP kinase | - |
| HPCU_RS07265 (HPCU_07435) | coaD | 1494172..1494645 (-) | 474 | WP_001169287.1 | pantetheine-phosphate adenylyltransferase | - |
| HPCU_RS07270 (HPCU_07440) | - | 1494645..1495208 (-) | 564 | WP_000780116.1 | UbiX family flavin prenyltransferase | - |
| HPCU_RS07275 (HPCU_07445) | flgA | 1495218..1495874 (-) | 657 | WP_000670254.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPCU_RS07280 (HPCU_07450) | uvrD | 1495871..1497916 (-) | 2046 | WP_000345172.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21267.91 Da Isoelectric Point: 9.4455
>NTDB_id=46758 HPCU_RS07255 WP_001203650.1 1493032..1493607(-) (comFC) [Helicobacter pylori Cuz20]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAINAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAINAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=46758 HPCU_RS07255 WP_001203650.1 1493032..1493607(-) (comFC) [Helicobacter pylori Cuz20]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCACTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCACTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |