Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPCU_RS01940 Genome accession   NC_017358
Coordinates   397211..397615 (+) Length   134 a.a.
NCBI ID   WP_000599165.1    Uniprot ID   A0AAE7TSC0
Organism   Helicobacter pylori Cuz20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 392211..402615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPCU_RS01905 (HPCU_01970) - 392386..393324 (-) 939 WP_000833955.1 tetraacyldisaccharide 4'-kinase -
  HPCU_RS01910 (HPCU_01975) - 393321..394103 (-) 783 WP_001168223.1 NAD+ synthase -
  HPCU_RS01920 (HPCU_01980) ilvC 394350..395342 (+) 993 WP_001207784.1 ketol-acid reductoisomerase -
  HPCU_RS01925 (HPCU_01985) minD 395366..396172 (+) 807 WP_001019023.1 septum site-determining protein MinD -
  HPCU_RS01930 (HPCU_01990) minE 396169..396402 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPCU_RS01935 (HPCU_01995) dprA 396414..397214 (+) 801 WP_000841120.1 DNA-processing protein DprA Machinery gene
  HPCU_RS01940 (HPCU_02000) dprB 397211..397615 (+) 405 WP_000599165.1 Holliday junction resolvase RuvX Machinery gene
  HPCU_RS01945 (HPCU_02010) - 397849..398658 (+) 810 WP_001059042.1 SEL1-like repeat protein -
  HPCU_RS01950 (HPCU_02015) - 398848..399186 (+) 339 WP_000699928.1 hypothetical protein -
  HPCU_RS01955 (HPCU_02020) - 399170..399736 (+) 567 WP_000037124.1 hypothetical protein -
  HPCU_RS01960 (HPCU_02025) - 399748..399966 (+) 219 WP_014534202.1 lysozyme -
  HPCU_RS01970 (HPCU_02035) - 400286..400672 (+) 387 Protein_386 DUF1294 domain-containing protein -
  HPCU_RS01975 - 400672..401458 (+) 787 Protein_387 hypothetical protein -
  HPCU_RS01980 (HPCU_02045) - 401448..402536 (+) 1089 WP_000426613.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15154.70 Da        Isoelectric Point: 9.2303

>NTDB_id=46751 HPCU_RS01940 WP_000599165.1 397211..397615(+) (dprB) [Helicobacter pylori Cuz20]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=46751 HPCU_RS01940 WP_000599165.1 397211..397615(+) (dprB) [Helicobacter pylori Cuz20]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955

Multiple sequence alignment