Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6J88_RS07820 Genome accession   NZ_CP069500
Coordinates   1544228..1544965 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_1258     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1539228..1549965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J88_RS07805 (I6J88_07810) clpC 1539682..1542255 (-) 2574 WP_016238453.1 ATP-dependent chaperone ClpB Regulator
  I6J88_RS07810 (I6J88_07815) yfiH 1542385..1543116 (-) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  I6J88_RS07815 (I6J88_07820) rluD 1543113..1544093 (-) 981 WP_204086152.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6J88_RS07820 (I6J88_07825) comL 1544228..1544965 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6J88_RS07825 (I6J88_07830) raiA 1545235..1545576 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6J88_RS07830 (I6J88_07835) pheL 1545680..1545727 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I6J88_RS07835 (I6J88_07840) pheA 1545826..1546986 (+) 1161 WP_000200107.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6J88_RS07840 (I6J88_07845) tyrA 1547029..1548150 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6J88_RS07845 (I6J88_07850) aroF 1548161..1549231 (-) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I6J88_RS07850 (I6J88_07855) yfiL 1549441..1549806 (+) 366 WP_000976008.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=467501 I6J88_RS07820 WP_000197686.1 1544228..1544965(+) (comL) [Escherichia coli strain FDAARGOS_1258]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=467501 I6J88_RS07820 WP_000197686.1 1544228..1544965(+) (comL) [Escherichia coli strain FDAARGOS_1258]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376