Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPV225_RS07205 | Genome accession | NC_017355 |
| Coordinates | 1498055..1498630 (+) | Length | 191 a.a. |
| NCBI ID | WP_001203603.1 | Uniprot ID | - |
| Organism | Helicobacter pylori v225d | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1493055..1503630
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPV225_RS07180 (HPV225_1537) | uvrD | 1493746..1495791 (+) | 2046 | WP_000345155.1 | DNA helicase UvrD | - |
| HPV225_RS07185 (HPV225_1538) | flgA | 1495788..1496444 (+) | 657 | WP_000697675.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPV225_RS07190 (HPV225_1539) | - | 1496454..1497017 (+) | 564 | WP_000780110.1 | UbiX family flavin prenyltransferase | - |
| HPV225_RS07195 (HPV225_1540) | coaD | 1497017..1497490 (+) | 474 | WP_001169287.1 | pantetheine-phosphate adenylyltransferase | - |
| HPV225_RS07200 (HPV225_1541) | tmk | 1497492..1498067 (+) | 576 | WP_000289749.1 | dTMP kinase | - |
| HPV225_RS07205 (HPV225_1542) | comFC | 1498055..1498630 (+) | 576 | WP_001203603.1 | ComF family protein | Machinery gene |
| HPV225_RS07210 (HPV225_1543) | - | 1498663..1500702 (+) | 2040 | WP_001147698.1 | HsdM family class I SAM-dependent methyltransferase | - |
| HPV225_RS08610 (HPV225_1544) | - | 1500699..1501986 (+) | 1288 | Protein_1406 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21394.03 Da Isoelectric Point: 9.4519
>NTDB_id=46740 HPV225_RS07205 WP_001203603.1 1498055..1498630(+) (comFC) [Helicobacter pylori v225d]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRNFTFRGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRNFTFRGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=46740 HPV225_RS07205 WP_001203603.1 1498055..1498630(+) (comFC) [Helicobacter pylori v225d]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAGATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCACGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAGAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAGATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCACGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAGAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |