Detailed information NTG0467358

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: H0242_RS06030
• Genome accession: NZ_CP059148
• Coordinates: 1150482..1153082 (+)
• Length: 866 a.a.
• NCBI ID: WP_000365378.1
• Uniprot ID: A0A9W3P241
• Organism: Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1145482..1158082

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0242_RS05995 (H0242_05940)	prsA	1146246..1147103 (-)	858	WP_001214223.1	peptidylprolyl isomerase PrsA	-
H0242_RS06000 (H0242_05945)	-	1147232..1147363 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
H0242_RS06005 (H0242_05950)	-	1147464..1148321 (+)	858	WP_000364431.1	YitT family protein	-
H0242_RS06010 (H0242_05955)	-	1148347..1148544 (-)	198	WP_000527408.1	DUF3813 domain-containing protein	-
H0242_RS06015 (H0242_05960)	-	1148545..1148685 (-)	141	WP_000516816.1	hypothetical protein	-
H0242_RS06020 (H0242_05965)	-	1148791..1149600 (-)	810	WP_001041241.1	Cof-type HAD-IIB family hydrolase	-
H0242_RS06025 (H0242_05970)	-	1150091..1150270 (+)	180	WP_000531422.1	YjzC family protein	-
H0242_RS06030 (H0242_05975)	clpC	1150482..1153082 (+)	2601	WP_000365378.1	ATP-dependent chaperone ClpB	Regulator
H0242_RS06035 (H0242_05980)	-	1153121..1153303 (-)	183	WP_001211116.1	YjzD family protein	-
H0242_RS06040 (H0242_05985)	-	1153460..1154194 (+)	735	WP_000028706.1	hypothetical protein	-
H0242_RS06045 (H0242_05990)	-	1154224..1155096 (+)	873	WP_061666480.1	NAD-dependent epimerase/dehydratase family protein	-
H0242_RS06050 (H0242_05995)	comZ	1155151..1155327 (+)	177	WP_001003335.1	ComZ family protein	Regulator
H0242_RS06055 (H0242_06000)	fabH	1155559..1156491 (+)	933	WP_001100531.1	beta-ketoacyl-ACP synthase III	-
H0242_RS06060 (H0242_06005)	fabF	1156523..1157761 (+)	1239	WP_086405979.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97512.45 Da
• Isoelectric Point: 5.1561

>NTDB_id=467358 H0242_RS06030 WP_000365378.1 1150482..1153082(+) (clpC) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGAESLIKKKPSVTGSGAE
VGKLYITGALQQLFVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLFTRFHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=467358 H0242_RS06030 WP_000365378.1 1150482..1153082(+) (clpC) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCATCA
AGAAGTAGATACTGTTCATCTCTTGTTTACATTATTAGAAGAGCAAGATGGGTTAGCAGTGCGTATTTTTCAAAAAATGA
ATGTCGATATAGAAGCGTTAAAGCAAGGCGCCGAAAGTTTAATTAAGAAAAAGCCTTCTGTAACGGGAAGCGGTGCAGAA
GTAGGCAAATTATATATAACAGGTGCTCTGCAACAACTATTTGTAAGAGCAGGAAAAGAAGCAGAGAAATTGCAAGATGA
CTACATTTCAGTGGAACATGTATTGCTTGCTTTTTCTGAAGAAAAAGGCGATATCAATCAATTATTTACAAGATTTCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCAGAAGTGAGAGCAGGGAAAATTGATCCTGTTATTGGCCGGGA
TAGTGAAATTCGACGTGTCATTCGCATTCTTTCACGTAAAACGAAAAACAACCCTGTTTTAATTGGTGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGGTTAGCGCAGCGTATTGTGAAAAAAGATGTACCTGAAGGGCTAAAAGATAGAACGATT
TTCGCGTTAGATATGAGTGCGCTCGTAGCTGGTGCGAAATTCCGTGGTGAGTTCGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGGCGTATTTTATTATTTATTGATGAACTTCATACAATCGTTGGCGCCGGTAAAACAGAAG
GTGCGATGGATGCAGGGAATATGCTAAAACCAATGCTTGCGCGTGGTGAACTGCATTGTATCGGGGCGACGACATTAGAT
GAATATCGTAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACGATTTCCATATTACGTGGATTAAAAGAGCGTTTTGAAATTTATCACGGTGTAAATATTCATGACCGTGCGATTG
TTGCAGCGTCAGTTTTATCAGATCGATATATTTCAGATCGATTCTTACCAGATAAAGCAATTGACCTTGTTGATGAGGCG
TGCGCAACAATTCGTACAGAAATTGATTCTATGCCAACAGAATTAGATGAAGTAACGCGTCGTATTATGCAGTTAGAAAT
TGAGGAAGCAGCTCTTGGAAAAGAAACAGATCGTGGTAGCCAAGAACGTCTTAAAACGTTGCAACGTGAACTATCAGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGACATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAACGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGTAATTACGATTTAAATAAAGCGGCCGAACTTCGTCACGG
GAAAATTCCAGCAATTGAAAAAGAGTTAAAAGAAGCGGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCAGATATTGTTTCACGCTGGACTGGTATTCCTGTTGCTAAACTCGTTGAAGGT
GAACGCGAGAAATTACTACGCTTAGAGCAAATCTTATCAGAGCGTGTCATCGGACAAGAGGAAGCAGTAAGCTTAGTATC
AGACGCGGTTCTTCGTGCTCGCGCTGGTATTAAAGATCCGAACCGCCCGATTGGTTCCTTTATTTTCTTAGGCCCTACGG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGTATTGATATG
TCTGAGTATATGGAGAAACACGCAGTGTCACGCTTAATTGGTGCACCTCCTGGATATGTAGGATATGAAGAAGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCATATTCCGTTATTTTATTAGATGAAATTGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCGCAAGGACGTACAGTGGACTTTAAAAACACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTACTAGATGGATTAGAAGAAGATGGCTCGATTAAAGAGGAATCAAGAGA
CCTTGTAATGGGGCAATTAAGAGGACATTTCCGCCCTGAATTTTTAAACCGTGTTGATGAAATTATTTTATTTAAACCTC
TTACAACGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAATTACAAGGGCGTTTAGCTGACCGTCACATTACA
GTAGAATTAACAGACGCAGCAAAAGAATTCGTTGTAGAAGCTGGCTTTGATCCGATGTATGGAGCTCGTCCATTAAAACG
ATACGTACAACGTCAAGTGGAAACGAAATTAGCGCGAGAATTAATTGCAGGAACAATTACTGACAATAGTCACGTAGTTG
TCGATGTAGAAAATAACGAATTAGTTGTTCATGTGAAATAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• AAA lid domain (AAA_lid_9) (345-447)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.657	100	0.482
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.039	100	0.424
clpC	Lactococcus lactis subsp. cremoris KW2	47.199	82.448	0.389