Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPV225_RS01650 Genome accession   NC_017355
Coordinates   332491..332895 (+) Length   134 a.a.
NCBI ID   WP_000599160.1    Uniprot ID   -
Organism   Helicobacter pylori v225d     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 327491..337895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPV225_RS01615 (HPV225_0347) - 327665..328603 (-) 939 WP_000833971.1 tetraacyldisaccharide 4'-kinase -
  HPV225_RS01620 (HPV225_0348) - 328600..329382 (-) 783 WP_001168215.1 NAD+ synthase -
  HPV225_RS01630 (HPV225_0350) ilvC 329630..330622 (+) 993 WP_001207779.1 ketol-acid reductoisomerase -
  HPV225_RS01635 (HPV225_0351) minD 330646..331452 (+) 807 WP_001019042.1 septum site-determining protein MinD -
  HPV225_RS01640 (HPV225_0352) minE 331449..331682 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HPV225_RS01645 (HPV225_0353) dprA 331694..332494 (+) 801 WP_000841141.1 DNA-processing protein DprA Machinery gene
  HPV225_RS01650 dprB 332491..332895 (+) 405 WP_000599160.1 Holliday junction resolvase RuvX Machinery gene
  HPV225_RS01655 (HPV225_0355) - 333023..333841 (+) 819 WP_014533630.1 tetratricopeptide repeat protein -
  HPV225_RS01660 (HPV225_0356) - 333885..334223 (+) 339 WP_000699914.1 hypothetical protein -
  HPV225_RS01665 (HPV225_0357) - 334207..334767 (+) 561 WP_000037128.1 hypothetical protein -
  HPV225_RS08305 (HPV225_0358) - 335023..335448 (+) 426 WP_238523865.1 hypothetical protein -
  HPV225_RS01675 (HPV225_0360) - 335766..336151 (+) 386 Protein_322 DUF1294 domain-containing protein -
  HPV225_RS01680 (HPV225_0361) - 336151..336936 (+) 786 WP_000488081.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15265.75 Da        Isoelectric Point: 9.1725

>NTDB_id=46731 HPV225_RS01650 WP_000599160.1 332491..332895(+) (dprB) [Helicobacter pylori v225d]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=46731 HPV225_RS01650 WP_000599160.1 332491..332895(+) (dprB) [Helicobacter pylori v225d]
GTGATTTTGGCATGCGATGTGGGCTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATCTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTATTAGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.744

99.254

0.97

Multiple sequence alignment