Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0G71_RS00040 Genome accession   NZ_CP059140
Coordinates   9266..9784 (+) Length   172 a.a.
NCBI ID   WP_013085589.1    Uniprot ID   A0A109DE21
Organism   Lactobacillus crispatus strain B4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4266..14784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0G71_RS00030 (H0G71_00030) gyrA 6222..8702 (+) 2481 WP_089142922.1 DNA gyrase subunit A -
  H0G71_RS00035 (H0G71_00035) rpsF 8920..9216 (+) 297 WP_005729269.1 30S ribosomal protein S6 -
  H0G71_RS00040 (H0G71_00040) ssb 9266..9784 (+) 519 WP_013085589.1 single-stranded DNA-binding protein Machinery gene
  H0G71_RS00045 (H0G71_00045) rpsR 9812..10048 (+) 237 WP_003549366.1 30S ribosomal protein S18 -
  H0G71_RS00050 (H0G71_00050) - 10212..12233 (+) 2022 WP_180808338.1 DHH family phosphoesterase -
  H0G71_RS00055 (H0G71_00055) rplI 12245..12700 (+) 456 WP_005721048.1 50S ribosomal protein L9 -
  H0G71_RS00060 (H0G71_00060) dnaB 12719..14110 (+) 1392 WP_158181611.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18649.18 Da        Isoelectric Point: 4.7317

>NTDB_id=467281 H0G71_RS00040 WP_013085589.1 9266..9784(+) (ssb) [Lactobacillus crispatus strain B4]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNAGSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=467281 H0G71_RS00040 WP_013085589.1 9266..9784(+) (ssb) [Lactobacillus crispatus strain B4]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTCGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTGGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109DE21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.571

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.273

100

0.535