Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPV225_RS00100 Genome accession   NC_017355
Coordinates   13743..14006 (+) Length   87 a.a.
NCBI ID   WP_000584977.1    Uniprot ID   -
Organism   Helicobacter pylori v225d     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8743..19006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPV225_RS00075 (HPV225_0015) groES 9036..9392 (-) 357 WP_000671943.1 co-chaperone GroES -
  HPV225_RS00080 (HPV225_0016) dnaG 9667..11346 (+) 1680 WP_000601550.1 DNA primase -
  HPV225_RS00085 (HPV225_0017) - 11343..12395 (+) 1053 WP_000802578.1 MnmA/TRMU family protein -
  HPV225_RS00090 (HPV225_0019) - 12487..13314 (+) 828 WP_001154895.1 DUF5718 family protein -
  HPV225_RS00095 (HPV225_0020) comB2 13462..13743 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPV225_RS00100 (HPV225_0021) comB3 13743..14006 (+) 264 WP_000584977.1 hypothetical protein Machinery gene
  HPV225_RS00105 (HPV225_0022) comB4 14008..16371 (+) 2364 WP_000890543.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPV225_RS00110 (HPV225_0025) - 16691..18031 (+) 1341 WP_041169163.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10042.16 Da        Isoelectric Point: 9.5507

>NTDB_id=46722 HPV225_RS00100 WP_000584977.1 13743..14006(+) (comB3) [Helicobacter pylori v225d]
MIILSASVKNLREISVKEKFLWLNAKSYLISVLAPFILLPWIDLLSAFLLYLGFLVLFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=46722 HPV225_RS00100 WP_000584977.1 13743..14006(+) (comB3) [Helicobacter pylori v225d]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTCTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

95.402

100

0.954

Multiple sequence alignment