Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPV225_RS00095 Genome accession   NC_017355
Coordinates   13462..13743 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori v225d     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8462..18743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPV225_RS00075 (HPV225_0015) groES 9036..9392 (-) 357 WP_000671943.1 co-chaperone GroES -
  HPV225_RS00080 (HPV225_0016) dnaG 9667..11346 (+) 1680 WP_000601550.1 DNA primase -
  HPV225_RS00085 (HPV225_0017) - 11343..12395 (+) 1053 WP_000802578.1 MnmA/TRMU family protein -
  HPV225_RS00090 (HPV225_0019) - 12487..13314 (+) 828 WP_001154895.1 DUF5718 family protein -
  HPV225_RS00095 (HPV225_0020) comB2 13462..13743 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPV225_RS00100 (HPV225_0021) comB3 13743..14006 (+) 264 WP_000584977.1 hypothetical protein Machinery gene
  HPV225_RS00105 (HPV225_0022) comB4 14008..16371 (+) 2364 WP_000890543.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPV225_RS00110 (HPV225_0025) - 16691..18031 (+) 1341 WP_041169163.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=46721 HPV225_RS00095 WP_001272686.1 13462..13743(+) (comB2) [Helicobacter pylori v225d]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=46721 HPV225_RS00095 WP_001272686.1 13462..13743(+) (comB2) [Helicobacter pylori v225d]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTATTTGGGATTTTTTTATTCTTT
AAAGCCCCAAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment