Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6J79_RS22965 Genome accession   NZ_CP069459
Coordinates   4740078..4740815 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_1249     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4735078..4745815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J79_RS22940 (I6J79_22940) tyrA 4735454..4736575 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6J79_RS22945 (I6J79_22945) pheA 4736618..4737778 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6J79_RS22950 (I6J79_22950) pheL 4737877..4737924 (-) 48 WP_010723158.1 phe operon leader peptide -
  I6J79_RS22955 (I6J79_22955) raiA 4738028..4738369 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6J79_RS22960 (I6J79_22960) - 4738628..4739974 (-) 1347 WP_204147777.1 IS4-like element IS4 family transposase -
  I6J79_RS22965 (I6J79_22965) comL 4740078..4740815 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6J79_RS22970 (I6J79_22970) rluD 4740950..4741930 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6J79_RS22975 (I6J79_22975) yfiH 4741927..4742658 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  I6J79_RS22980 (I6J79_22980) clpC 4742788..4745361 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=467215 I6J79_RS22965 WP_000197686.1 4740078..4740815(-) (comL) [Escherichia coli strain FDAARGOS_1249]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=467215 I6J79_RS22965 WP_000197686.1 4740078..4740815(-) (comL) [Escherichia coli strain FDAARGOS_1249]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376