Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPKB_RS06955 | Genome accession | NC_017354 |
| Coordinates | 1425341..1425916 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203570.1 | Uniprot ID | - |
| Organism | Helicobacter pylori 52 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1420341..1430916
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPKB_RS06935 (HPKB_1373) | - | 1421999..1423123 (-) | 1125 | WP_079990950.1 | restriction endonuclease subunit S | - |
| HPKB_RS06940 (HPKB_1374) | - | 1423173..1424204 (+) | 1032 | WP_014533550.1 | DNA cytosine methyltransferase | - |
| HPKB_RS06945 (HPKB_1375) | - | 1424173..1424940 (+) | 768 | WP_001183570.1 | Eco47II family restriction endonuclease | - |
| HPKB_RS06950 (HPKB_1376) | - | 1424946..1425308 (-) | 363 | Protein_1331 | N-6 DNA methylase | - |
| HPKB_RS06955 (HPKB_1377) | comFC | 1425341..1425916 (-) | 576 | WP_001203570.1 | ComF family protein | Machinery gene |
| HPKB_RS06960 (HPKB_1378) | tmk | 1425904..1426479 (-) | 576 | WP_000289725.1 | dTMP kinase | - |
| HPKB_RS06965 (HPKB_1379) | coaD | 1426481..1426954 (-) | 474 | WP_001169261.1 | pantetheine-phosphate adenylyltransferase | - |
| HPKB_RS06970 (HPKB_1380) | - | 1426954..1427517 (-) | 564 | WP_000780134.1 | UbiX family flavin prenyltransferase | - |
| HPKB_RS06975 (HPKB_1381) | flgA | 1427527..1428183 (-) | 657 | WP_000697662.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPKB_RS06980 (HPKB_1382) | uvrD | 1428180..1430225 (-) | 2046 | WP_000345180.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21350.96 Da Isoelectric Point: 9.0901
>NTDB_id=46719 HPKB_RS06955 WP_001203570.1 1425341..1425916(-) (comFC) [Helicobacter pylori 52]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRDFTFKGDKDLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRDFTFKGDKDLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=46719 HPKB_RS06955 WP_001203570.1 1425341..1425916(-) (comFC) [Helicobacter pylori 52]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTATGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAGATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTATGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAGATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |