Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H0S56_RS01960 Genome accession   NZ_CP059081
Coordinates   430775..431410 (-) Length   211 a.a.
NCBI ID   WP_195725549.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425775..436410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS01925 (H0S56_01925) mlaE 425910..426689 (+) 780 WP_005248230.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  H0S56_RS01930 (H0S56_01930) - 426689..427366 (+) 678 WP_195725547.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H0S56_RS01935 (H0S56_01935) - 427385..428023 (+) 639 WP_004281529.1 phospholipid-binding protein MlaC -
  H0S56_RS01940 (H0S56_01940) - 428039..428329 (+) 291 WP_004281528.1 STAS domain-containing protein -
  H0S56_RS01945 (H0S56_01945) - 428582..429595 (-) 1014 WP_004732304.1 CorA family divalent cation transporter -
  H0S56_RS01950 (H0S56_01950) - 429748..430338 (+) 591 WP_195726032.1 TIGR00730 family Rossman fold protein -
  H0S56_RS01955 (H0S56_01955) - 430369..430770 (+) 402 WP_195725548.1 NUDIX domain-containing protein -
  H0S56_RS01960 (H0S56_01960) comF 430775..431410 (-) 636 WP_195725549.1 ComF family protein Machinery gene
  H0S56_RS01965 (H0S56_01965) recG 431397..433442 (-) 2046 WP_195725550.1 ATP-dependent DNA helicase RecG -
  H0S56_RS01970 (H0S56_01970) - 433476..434279 (+) 804 WP_195725551.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24258.36 Da        Isoelectric Point: 9.2581

>NTDB_id=467121 H0S56_RS01960 WP_195725549.1 430775..431410(-) (comF) [Acinetobacter lwoffii strain 12CE1]
MPMFKLLQHGKSWLTRLQPCQLCLTDHQSIHSVCEDCWRQLPWAHQTIQRQEMQFQIACDYAYPMDRLIQLFKYEQKLHL
QNLLAGVLLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKQLNVPIWQPVQRLKQHSQKGLSRLERIEDIQSQF
QVSTISKLRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKVYAACLAGAGI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=467121 H0S56_RS01960 WP_195725549.1 430775..431410(-) (comF) [Acinetobacter lwoffii strain 12CE1]
ATGCCTATGTTTAAATTACTGCAACATGGAAAATCCTGGCTGACCCGCTTACAGCCCTGCCAGCTCTGTCTGACCGATCA
TCAGTCCATTCATTCAGTCTGTGAAGATTGCTGGCGACAATTACCCTGGGCACATCAAACCATTCAACGGCAGGAAATGC
AGTTCCAGATTGCCTGCGATTATGCTTACCCGATGGACCGGCTGATTCAACTGTTTAAATATGAACAGAAGCTGCATTTG
CAAAATTTACTGGCAGGTGTGCTGTTAAGTTTAGACCTACCTAAAGTCAGTGCGATAGTACCGATGCCGATCTCGAATGA
GCGTCTGGCCGAGCGCGGGTATAATCAATCTCTGGTGCTGGCAAAACATGTGGCGAAACAGCTGAATGTACCCATCTGGC
AACCTGTTCAACGACTGAAACAACACTCGCAAAAGGGCTTAAGCCGGCTGGAGCGGATTGAAGACATCCAGTCACAATTC
CAGGTCAGCACGATTTCCAAGCTGCGGTATCGTCGGGTGCTGATTATCGATGATGTCGTCACGACTGGCAGCTCGATTCG
GGCACTGAGCCAAACACTTGAACAACTGGGTTGTCAAAAAGTTTATGCGGCCTGTCTGGCCGGTGCGGGAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.058

98.578

0.602
  comF Acinetobacter baumannii D1279779

60.577

98.578

0.597