Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H0S57_RS14970 Genome accession   NZ_CP059080
Coordinates   3083269..3083916 (+) Length   215 a.a.
NCBI ID   WP_195728292.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain E10B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3078269..3088916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS14950 (H0S57_14955) - 3079518..3079835 (-) 318 WP_125273535.1 hypothetical protein -
  H0S57_RS14955 (H0S57_14960) - 3079964..3080197 (-) 234 WP_125273620.1 DUF6500 family protein -
  H0S57_RS14960 (H0S57_14965) - 3080394..3081203 (-) 810 WP_125273536.1 NAD-dependent epimerase/dehydratase family protein -
  H0S57_RS14965 (H0S57_14970) recG 3081237..3083282 (+) 2046 WP_151836655.1 ATP-dependent DNA helicase RecG -
  H0S57_RS14970 (H0S57_14975) comF 3083269..3083916 (+) 648 WP_195728292.1 ComF family protein Machinery gene
  H0S57_RS14975 (H0S57_14980) - 3083917..3084321 (-) 405 WP_004691357.1 NUDIX domain-containing protein -
  H0S57_RS14980 (H0S57_14985) - 3084318..3084917 (-) 600 WP_004977937.1 TIGR00730 family Rossman fold protein -
  H0S57_RS14985 (H0S57_14990) - 3085070..3086083 (+) 1014 WP_004691361.1 CorA family divalent cation transporter -
  H0S57_RS14990 (H0S57_14995) - 3086165..3086452 (-) 288 WP_126035170.1 lipid asymmetry maintenance protein MlaB -
  H0S57_RS14995 (H0S57_15000) - 3086464..3087099 (-) 636 WP_087527364.1 phospholipid-binding protein MlaC -
  H0S57_RS15000 (H0S57_15005) - 3087120..3087794 (-) 675 WP_151836653.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H0S57_RS15005 (H0S57_15010) mlaE 3087794..3088573 (-) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24873.06 Da        Isoelectric Point: 9.1537

>NTDB_id=467099 H0S57_RS14970 WP_195728292.1 3083269..3083916(+) (comF) [Acinetobacter johnsonii strain E10B]
MPMFSHLLHTAKHLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHSQTIEKQELSIHVVGQYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYVKLYRRVLILDDVVTTGSSIQALTLQLEQLGSHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=467099 H0S57_RS14970 WP_195728292.1 3083269..3083916(+) (comF) [Acinetobacter johnsonii strain E10B]
ATGCCTATGTTTAGTCATTTACTACACACCGCCAAACACTTACTACACAAAGCACAGCCTTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTGCACTCGGTCTGTTTGGACTGCTGGCAACAACTTCCACTGCATTCACAGACCATTGAAAAACAAGAAC
TGAGTATTCATGTCGTAGGGCAGTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTTTCAGGCATTCTTCAGCAAATTCGCTTACCTAAAGTACAAGCAATTGTTCCGATGCCGATTTCGAC
TCAGCGTTTAGCGGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTAAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGTAAAACTCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTAGAACAATTGGGTTCTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

54.502

98.14

0.535
  comF Acinetobacter baumannii D1279779

54.502

98.14

0.535