Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPKB_RS01730 Genome accession   NC_017354
Coordinates   349623..350027 (+) Length   134 a.a.
NCBI ID   WP_000599247.1    Uniprot ID   -
Organism   Helicobacter pylori 52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344623..355027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPKB_RS01695 (HPKB_0335) - 344802..345740 (-) 939 WP_000833932.1 tetraacyldisaccharide 4'-kinase -
  HPKB_RS01700 (HPKB_0336) - 345737..346519 (-) 783 WP_001168283.1 NAD+ synthase -
  HPKB_RS01710 (HPKB_0338) ilvC 346767..347759 (+) 993 WP_001207778.1 ketol-acid reductoisomerase -
  HPKB_RS01715 (HPKB_0339) minD 347778..348584 (+) 807 WP_001019068.1 septum site-determining protein MinD -
  HPKB_RS01720 (HPKB_0340) minE 348581..348814 (+) 234 WP_000051408.1 cell division topological specificity factor MinE -
  HPKB_RS01725 (HPKB_0341) dprA 348826..349626 (+) 801 WP_000835227.1 DNA-processing protein DprA Machinery gene
  HPKB_RS01730 (HPKB_0342) dprB 349623..350027 (+) 405 WP_000599247.1 Holliday junction resolvase RuvX Machinery gene
  HPKB_RS01735 (HPKB_0343) - 350159..350467 (+) 309 WP_079990965.1 tetratricopeptide repeat protein -
  HPKB_RS08405 - 350376..350630 (+) 255 WP_079990919.1 tetratricopeptide repeat protein -
  HPKB_RS01740 (HPKB_0344) - 350816..351121 (+) 306 WP_000699931.1 hypothetical protein -
  HPKB_RS01745 (HPKB_0345) - 351105..351665 (+) 561 WP_000032369.1 hypothetical protein -
  HPKB_RS01750 (HPKB_0346) - 351721..352095 (+) 375 WP_014533409.1 glycoside hydrolase family protein -
  HPKB_RS01755 (HPKB_0347) - 352083..352349 (+) 267 WP_014533410.1 hypothetical protein -
  HPKB_RS01765 - 352641..353025 (+) 385 Protein_340 DUF1294 domain-containing protein -
  HPKB_RS01770 (HPKB_0348) - 353025..353810 (+) 786 WP_000458573.1 hypothetical protein -
  HPKB_RS08410 - 353800..354072 (+) 273 WP_322536495.1 hypothetical protein -
  HPKB_RS01780 (HPKB_0349) - 354182..355021 (+) 840 WP_001013455.1 pilin -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15275.70 Da        Isoelectric Point: 7.8024

>NTDB_id=46709 HPKB_RS01730 WP_000599247.1 349623..350027(+) (dprB) [Helicobacter pylori 52]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFEGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=46709 HPKB_RS01730 WP_000599247.1 349623..350027(+) (dprB) [Helicobacter pylori 52]
GTGATTTTGGCATGCGATGTGGGGCTAAAACGCATTGGCATTGCCGTGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAACTTTTGGATTTTGAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963

Multiple sequence alignment