Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   H0S57_RS01365 Genome accession   NZ_CP059080
Coordinates   311018..312586 (-) Length   522 a.a.
NCBI ID   WP_151835729.1    Uniprot ID   A0AA42XFX5
Organism   Acinetobacter johnsonii strain E10B     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 306018..317586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS01350 (H0S57_01350) gpmI 306835..308382 (+) 1548 WP_004692841.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  H0S57_RS01355 (H0S57_01355) - 308401..309576 (+) 1176 WP_151835731.1 S41 family peptidase -
  H0S57_RS01360 (H0S57_01360) pilR 309581..310945 (-) 1365 WP_373868094.1 sigma-54-dependent transcriptional regulator Regulator
  H0S57_RS01365 (H0S57_01365) pilS 311018..312586 (-) 1569 WP_151835729.1 nitrogen regulation protein NR(II) Regulator
  H0S57_RS01370 (H0S57_01370) - 312608..313243 (-) 636 WP_004692836.1 response regulator -
  H0S57_RS01375 (H0S57_01375) - 313459..314514 (+) 1056 WP_125273423.1 serine hydrolase -
  H0S57_RS01380 (H0S57_01380) thrC 314602..315741 (-) 1140 WP_125273422.1 threonine synthase -
  H0S57_RS01385 (H0S57_01385) - 315807..317111 (-) 1305 WP_010325700.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59558.02 Da        Isoelectric Point: 6.3402

>NTDB_id=467072 H0S57_RS01365 WP_151835729.1 311018..312586(-) (pilS) [Acinetobacter johnsonii strain E10B]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFASSVLVDKQKALIITLIAVITLVYQHFIGSLLAATSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQHVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMLANDPQQELLQNMITKQASRIDKIIGDTLSMARSKETYPTLIDVTAFLERFIVEDLPDVKEQ
IDYRISDPAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIHIRVYSYKNLVHIEVCDFGEGVATQDQSTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=467072 H0S57_RS01365 WP_151835729.1 311018..312586(-) (pilS) [Acinetobacter johnsonii strain E10B]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTTTAGGTGTTTGGTATGCATCGTATCGACTGTTTATTGG
TTGCTGTTTATTGTTGGTTTATCTACTGACTTACGAGCAGCTATTTTCAAATTATCAATATCCAGTACTGTATCGTTCTG
TGCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGAATACCACTTCAGCTC
ACCTTATTGTTTATCGTCGATGTCATTAGCCTCAGTTTACTCACTTTTGCCACCGATGGTCCAAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCTCTTCTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACGTTGATTGCTGTGA
TTACACTGGTTTATCAGCACTTTATTGGGAGTTTATTGGCTGCGACCTCGCTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGTTCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTTTA
CCAGTCACAAGAACTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTTCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCATGTGCATTATTGGGCATCTCCCCGATTTATGCCTATGACAAA
TATCCCTTATATAAGGCACAGCCTGATTTATTTGAACTACTCAAATTCGACCAACTGAAAAATGGAGAAAAATTCCAATT
TACATCGCAACTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACCTTATTCG
TCCTGCAAGATGCACAAAAAATTAATCAACATGTACAACAACTCAAGTTGGCTGCACTGGGACAACTTTCTGCCAGCATT
GCACATGAAATTCGCAACCCACTGGCAGCCATCACTCAAGCCAATGAGTTGATGCTAGCCAATGATCCACAACAAGAACT
GTTGCAAAACATGATTACCAAACAAGCCTCACGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGTAGTAAAG
AAACCTATCCAACCTTGATTGATGTCACCGCTTTTTTAGAACGTTTTATTGTTGAAGATTTGCCCGATGTCAAAGAGCAA
ATTGATTACCGTATTTCCGATCCAGCTCAGATTCAGTTTGATGAACAACAACTGAGACAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGGCATAATGCAGCTGAAGCCGAGCACATTCACATTCGAGTCTATAGCTACAAAAACCTCGTCCATATTG
AGGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAAGCACCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.077

99.808

0.6