Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H0S58_RS12400 Genome accession   NZ_CP059079
Coordinates   2657059..2658471 (+) Length   470 a.a.
NCBI ID   WP_195727620.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2652059..2663471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS12380 (H0S58_12385) thrC 2652300..2653445 (+) 1146 WP_195726666.1 threonine synthase -
  H0S58_RS12385 (H0S58_12390) - 2653520..2654572 (-) 1053 WP_053578964.1 serine hydrolase -
  H0S58_RS12390 (H0S58_12395) - 2654791..2655426 (+) 636 WP_053578965.1 response regulator -
  H0S58_RS12395 (H0S58_12400) pilS 2655461..2657038 (+) 1578 WP_195726667.1 sensor histidine kinase Regulator
  H0S58_RS12400 (H0S58_12405) pilR 2657059..2658471 (+) 1413 WP_195727620.1 sigma-54-dependent transcriptional regulator Regulator
  H0S58_RS12405 (H0S58_12410) - 2658480..2659607 (-) 1128 WP_411164412.1 S41 family peptidase -
  H0S58_RS12410 (H0S58_12415) gpmI 2659697..2661244 (-) 1548 WP_193889670.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  H0S58_RS12415 (H0S58_12420) lptG 2661373..2662443 (-) 1071 WP_193889668.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53427.73 Da        Isoelectric Point: 6.6948

>NTDB_id=467060 H0S58_RS12400 WP_195727620.1 2657059..2658471(+) (pilR) [Acinetobacter sp. TTH0-4 strain 1BD1]
MVERQPLVLIVDDEEDLCTLMQMTLSRMGIKTHIAYRLEQAKKRLCEHEYDACITDLNLPDGNGIQLVEWITQKMPSLPV
AVLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKAFNKPIEQLQTKQDSLEQRLLIGQSFPIQQLRITLNKIARS
QAPVFITGESGTGKEVIANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKRIRPVGSEHEIDVDFRVISASHQDLEALVQQGKFRHDLFFRIHVMDLVLPPLRERGDDIIL
LAHHFIQKISQEWGIPAKQLTERAKKFLLEQYYPGNVRELRNIIERAITLSDDEKIDLSQLQSAPLRYPRMNPVDLQESI
VLPRTESTLSGKKLPEEGLELYLENIEKDILLNALNLTHWNRTVAAKKLGMSFRSLRYRLKKFGLDTEDE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=467060 H0S58_RS12400 WP_195727620.1 2657059..2658471(+) (pilR) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATTGTGGAACGACAACCACTTGTTTTAATCGTGGATGATGAAGAAGATTTATGTACACTGATGCAAATGACTTTATCACG
GATGGGCATCAAAACGCATATTGCATATCGTCTTGAACAAGCAAAAAAGCGGTTATGCGAACATGAATACGATGCATGTA
TAACCGATTTAAACTTGCCCGATGGCAATGGCATTCAACTGGTCGAGTGGATTACGCAAAAAATGCCCTCATTGCCTGTT
GCAGTCCTGACCGCCTATGGCAACATGGATATCGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTCAGTAAACC
TATTAATCAGAAACATTTAGAACAACTTTTACAAAAAGCATTTAACAAACCCATCGAACAGCTTCAAACCAAACAAGACA
GTTTAGAACAACGGTTGTTAATTGGACAATCTTTTCCTATTCAACAATTAAGAATCACTTTAAATAAAATAGCTCGTTCT
CAAGCACCTGTCTTTATTACTGGTGAATCAGGAACAGGAAAAGAAGTGATTGCTAATCTGGTGCATCGCCTCAGCAATCG
TAATGAAGGCCCTTTTATTGCCATTAATTGCGGTGCGATTCCTACAGAACTGATGGAAAGTGAGCTTTTTGGACACAAAA
AAGGGAGTTTCACAGGTGCAACACAAGACAAACAAGGGCTGATTCAGTCGGCACATGGCGGCAGCCTATTTTTAGATGAG
ATTGCAGAGTTACCGCTGAACATGCAGGTCAAACTACTGCGTGCGGTGCAGGAAAAGCGCATACGTCCAGTGGGTTCAGA
ACATGAAATTGATGTTGATTTTCGCGTGATTAGCGCCAGTCATCAGGATTTAGAAGCTTTGGTACAGCAAGGCAAGTTTC
GACATGATTTGTTTTTCCGTATTCATGTGATGGATTTAGTTCTTCCTCCTCTACGTGAGCGTGGCGATGATATTATTTTA
CTCGCGCATCATTTTATTCAAAAAATTAGTCAGGAATGGGGAATTCCTGCCAAACAGCTCACTGAACGCGCAAAGAAATT
TTTACTGGAGCAATATTATCCAGGAAATGTCAGAGAGTTACGCAATATCATTGAACGGGCAATCACTTTAAGTGATGATG
AAAAAATTGATTTATCTCAGTTACAAAGTGCACCTTTACGTTATCCAAGAATGAATCCAGTCGATCTACAGGAATCTATT
GTTCTACCTCGTACTGAAAGCACACTTTCTGGTAAAAAGCTGCCTGAAGAAGGTTTAGAGCTTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCCTTGAACTTAACGCACTGGAACAGAACCGTGGCCGCCAAGAAACTGGGGATGTCCTTTC
GCTCGTTACGATACCGTTTAAAAAAATTCGGACTTGATACAGAAGACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

75.368

100

0.762
  pilR Pseudomonas aeruginosa PAK

49.237

97.66

0.481