Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   H0S58_RS12395 Genome accession   NZ_CP059079
Coordinates   2655461..2657038 (+) Length   525 a.a.
NCBI ID   WP_195726667.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2650461..2662038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS12375 (H0S58_12380) - 2650925..2652229 (+) 1305 WP_053578962.1 homoserine dehydrogenase -
  H0S58_RS12380 (H0S58_12385) thrC 2652300..2653445 (+) 1146 WP_195726666.1 threonine synthase -
  H0S58_RS12385 (H0S58_12390) - 2653520..2654572 (-) 1053 WP_053578964.1 serine hydrolase -
  H0S58_RS12390 (H0S58_12395) - 2654791..2655426 (+) 636 WP_053578965.1 response regulator -
  H0S58_RS12395 (H0S58_12400) pilS 2655461..2657038 (+) 1578 WP_195726667.1 sensor histidine kinase Regulator
  H0S58_RS12400 (H0S58_12405) pilR 2657059..2658471 (+) 1413 WP_195727620.1 sigma-54-dependent transcriptional regulator Regulator
  H0S58_RS12405 (H0S58_12410) - 2658480..2659607 (-) 1128 WP_411164412.1 S41 family peptidase -
  H0S58_RS12410 (H0S58_12415) gpmI 2659697..2661244 (-) 1548 WP_193889670.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 59962.90 Da        Isoelectric Point: 5.8843

>NTDB_id=467059 H0S58_RS12395 WP_195726667.1 2655461..2657038(+) (pilS) [Acinetobacter sp. TTH0-4 strain 1BD1]
MIQKNYSFELNQYHLAIWYTTYRLIITTCLLLIFLLTYPSLNADYQYPQFYSYVLMAYVAISFIQLISLKNLKYKIPLQL
TLLFVVDVVALSLMTLALDGPNLHLSLIFVITIFAASVLLDAQKALIITLIAVISVVYQLFLGSLFDLSSLNKIGNSALL
AFLFFMVYGSGQVAVKRFQILENLNFSQSLELKRLQNLNRYILEQIELGYLVLDENCNIVLSNPAACTLLGIAQIYVYDK
YPLIKVQPDLFELLKFDQLKNGEKFQFESQLSLFSIHIEVQKLIVPHQILTLLVLQDARKLNQRVQQLKLAALGQLSASI
AHEIRNPLAAIAQANELFLDSDPEQQRLLSQMIAKQAQRIDRIIQDTLTMVRNKETFPTLIQLNQFISQFIQEDLSDVAT
QIRCTIQSKISIIFDEAQLRQILINLIRNAIRHNSPEYPYIELNIYTYGSHIRIDVRDFGQGVASKDQAYLFQPFFSTEI
TGTGLGLYLSHSFCEANDAKLDYVQQEQGACFQIECLNANLNESL

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=467059 H0S58_RS12395 WP_195726667.1 2655461..2657038(+) (pilS) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGATACAAAAAAATTATAGTTTTGAGTTAAATCAATACCATTTGGCCATTTGGTATACGACATACAGACTCATTATCAC
GACATGTCTTTTACTGATTTTTTTACTGACCTATCCCAGTTTAAATGCAGATTATCAATACCCCCAATTCTATTCTTATG
TGTTGATGGCTTATGTGGCCATCAGTTTTATCCAACTGATTTCGCTTAAAAATTTAAAATATAAAATACCCCTTCAATTG
ACACTGCTTTTCGTGGTTGATGTGGTCGCTTTAAGTTTAATGACCTTAGCCTTAGATGGCCCCAACCTACATTTAAGCCT
TATTTTTGTCATTACTATTTTTGCCGCTTCCGTATTGCTCGATGCCCAAAAAGCGTTGATCATTACCTTAATTGCTGTCA
TCAGTGTGGTTTATCAGCTTTTTTTAGGCAGTTTATTTGATCTCTCCTCGCTCAATAAAATTGGAAACAGCGCTTTATTG
GCTTTTCTATTTTTTATGGTTTATGGCAGTGGTCAAGTCGCGGTAAAACGTTTTCAAATTCTAGAAAATTTAAATTTTTC
TCAATCTTTAGAATTAAAACGACTACAAAATCTAAATCGCTATATTTTAGAACAAATTGAATTGGGCTATTTAGTGCTGG
ATGAAAACTGCAATATCGTATTGAGTAATCCTGCCGCCTGTACACTATTGGGAATTGCCCAAATTTATGTTTATGACAAA
TATCCCCTCATCAAAGTACAACCTGATTTATTTGAACTACTCAAATTTGATCAGCTTAAAAATGGTGAAAAATTTCAATT
TGAATCGCAACTCAGCCTTTTTTCGATACACATTGAAGTACAAAAATTAATTGTTCCTCATCAAATCCTCACCCTCTTGG
TACTTCAAGATGCACGTAAACTTAATCAAAGAGTTCAACAATTAAAATTAGCCGCATTAGGCCAGTTATCCGCCAGTATT
GCCCACGAAATTCGTAATCCTTTAGCAGCCATCGCTCAGGCCAATGAACTCTTTCTTGACAGTGATCCTGAGCAGCAAAG
GCTTTTAAGTCAAATGATTGCGAAACAAGCGCAACGTATAGATCGAATCATACAAGACACCCTAACAATGGTGCGTAATA
AAGAAACTTTTCCGACTCTAATTCAATTAAATCAGTTTATTTCTCAATTTATTCAAGAAGATTTATCCGATGTTGCAACA
CAAATTCGTTGTACCATCCAAAGCAAAATCTCGATTATTTTTGATGAAGCACAACTGCGTCAAATTTTAATTAATTTGAT
TCGCAATGCTATTCGACACAACTCCCCCGAATATCCCTATATTGAACTGAATATTTATACGTATGGCAGTCATATTCGCA
TTGATGTGCGCGATTTTGGTCAGGGCGTGGCTTCAAAAGATCAGGCCTATTTATTTCAACCTTTTTTTAGTACCGAAATC
ACAGGAACTGGTTTAGGATTGTATTTATCACATAGTTTTTGCGAAGCAAATGATGCCAAACTGGACTATGTACAACAAGA
ACAAGGGGCATGTTTTCAAATAGAATGCCTCAATGCCAATTTAAATGAATCTTTATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.674

97.714

0.573