Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H0S58_RS01705 Genome accession   NZ_CP059079
Coordinates   369224..369856 (-) Length   210 a.a.
NCBI ID   WP_195726965.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364224..374856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS01670 (H0S58_01670) mlaE 364518..365294 (+) 777 WP_195726962.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  H0S58_RS01675 (H0S58_01675) - 365294..365962 (+) 669 WP_195726963.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H0S58_RS01680 (H0S58_01680) - 365982..366614 (+) 633 WP_053579486.1 phospholipid-binding protein MlaC -
  H0S58_RS01685 (H0S58_01685) - 366621..366920 (+) 300 WP_227552568.1 STAS domain-containing protein -
  H0S58_RS01690 (H0S58_01690) - 367036..368049 (-) 1014 WP_053579488.1 CorA family divalent cation transporter -
  H0S58_RS01695 (H0S58_01695) - 368204..368794 (+) 591 WP_053580295.1 TIGR00730 family Rossman fold protein -
  H0S58_RS01700 (H0S58_01700) - 368797..369204 (+) 408 WP_195726964.1 NUDIX hydrolase -
  H0S58_RS01705 (H0S58_01705) comF 369224..369856 (-) 633 WP_195726965.1 ComF family protein Machinery gene
  H0S58_RS01710 (H0S58_01710) recG 370119..372164 (-) 2046 WP_195726966.1 ATP-dependent DNA helicase RecG -
  H0S58_RS01715 (H0S58_01715) - 372199..372999 (+) 801 WP_195726967.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24304.49 Da        Isoelectric Point: 9.0756

>NTDB_id=467034 H0S58_RS01705 WP_195726965.1 369224..369856(-) (comF) [Acinetobacter sp. TTH0-4 strain 1BD1]
MFNLIHPLLNKSIHGLSSCILCGIDRQQHHSLCQDCWQQLPWLKSSVQRQEIDIQVACHYSYPMDRIIQKYKYEQQLQFQ
RLLAETLIELHLPKVQAIVPMPISAPRLAERGYNQSLVIAKILAKHLNVPVWQPISRSDQHSQKGLTRLERIENIEQQFE
ICTRSKLRYRRVLMLDDVVTTGSSLYALKQKLEVLGCQKIYAACLACAKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=467034 H0S58_RS01705 WP_195726965.1 369224..369856(-) (comF) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGTTCAATCTTATTCATCCACTGCTCAACAAAAGCATACATGGCCTTTCATCTTGCATTCTGTGTGGCATAGACCGACA
ACAACACCATTCACTCTGTCAGGATTGCTGGCAACAACTGCCTTGGTTGAAATCAAGTGTGCAAAGACAGGAAATAGATA
TTCAAGTTGCCTGCCATTATAGCTACCCGATGGATCGTATTATTCAAAAATATAAGTATGAACAACAATTACAGTTTCAG
CGTTTACTGGCCGAAACATTGATTGAACTCCACCTTCCGAAAGTACAAGCAATTGTTCCTATGCCTATTTCGGCTCCGCG
TTTAGCAGAACGTGGTTATAACCAATCTTTAGTCATTGCAAAAATTTTAGCAAAACATCTTAATGTTCCCGTTTGGCAAC
CCATTTCAAGATCAGACCAACACTCACAAAAAGGCTTAACCCGACTAGAACGAATCGAAAATATTGAACAACAATTTGAA
ATTTGCACACGTTCAAAGCTTCGTTATCGACGAGTACTCATGCTCGACGATGTGGTCACCACGGGAAGCTCTCTGTACGC
GTTAAAACAAAAACTAGAAGTTCTCGGTTGCCAAAAAATTTATGCGGCATGTCTTGCCTGTGCAAAAGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

58.095

100

0.581
  comF Acinetobacter baumannii D1279779

57.619

100

0.576