Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H0S59_RS17275 Genome accession   NZ_CP059078
Coordinates   3680060..3680482 (-) Length   140 a.a.
NCBI ID   WP_006582564.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain WM98B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3675060..3685482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S59_RS17245 (H0S59_17255) - 3675565..3676599 (+) 1035 WP_002051740.1 lipase secretion chaperone -
  H0S59_RS17250 (H0S59_17260) - 3676714..3677655 (+) 942 WP_080594638.1 triacylglycerol lipase -
  H0S59_RS17255 (H0S59_17265) rplS 3677708..3678076 (-) 369 WP_002051668.1 50S ribosomal protein L19 -
  H0S59_RS17260 (H0S59_17270) trmD 3678292..3679047 (-) 756 WP_006582565.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H0S59_RS17265 (H0S59_17275) rimM 3679094..3679642 (-) 549 WP_004711694.1 ribosome maturation factor RimM -
  H0S59_RS17270 (H0S59_17280) rpsP 3679662..3679913 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  H0S59_RS17275 (H0S59_17285) comF 3680060..3680482 (-) 423 WP_006582564.1 type IV pilin protein Machinery gene
  H0S59_RS17280 (H0S59_17290) - 3680482..3681045 (-) 564 WP_006582563.1 type IV pilin protein -
  H0S59_RS17285 (H0S59_17295) - 3681057..3684668 (-) 3612 WP_006582562.1 pilus assembly protein -
  H0S59_RS17290 (H0S59_17300) - 3684668..3685357 (-) 690 WP_006582561.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15628.70 Da        Isoelectric Point: 9.2622

>NTDB_id=467018 H0S59_RS17275 WP_006582564.1 3680060..3680482(-) (comF) [Acinetobacter nosocomialis strain WM98B]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYRIRTNRADVQNEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWTLTATPKTNTIQVGNGTVLLNSDGQKCWTKGQSCTTSTTSNWDGR

Nucleotide


Download         Length: 423 bp        

>NTDB_id=467018 H0S59_RS17275 WP_006582564.1 3680060..3680482(-) (comF) [Acinetobacter nosocomialis strain WM98B]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCCCTCCTATACACAATATAGAATTCGGACGAATCGTGCAGATGTGCAAAATGAAATGATGCAAACAGCGCAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGACGCTTACTGCAACTCCTAAAACAAATACGATTCA
AGTTGGAAATGGCACTGTACTTTTGAATAGTGACGGGCAGAAATGTTGGACTAAAGGTCAGTCTTGTACAACTTCAACCA
CTTCCAATTGGGATGGACGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-106)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

52.778

100

0.543
  pilE Acinetobacter baumannii D1279779

51.471

97.143

0.5
  pilA2 Legionella pneumophila str. Paris

39.85

95

0.379
  pilA2 Legionella pneumophila strain ERS1305867

38.686

97.857

0.379