Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H0S59_RS16930 Genome accession   NZ_CP059078
Coordinates   3609792..3610427 (+) Length   211 a.a.
NCBI ID   WP_031982346.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain WM98B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3604792..3615427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S59_RS16915 (H0S59_16925) adeT2 3605852..3606838 (-) 987 WP_004711792.1 putative multidrug efflux protein AdeT2 -
  H0S59_RS16920 (H0S59_16930) - 3606918..3607733 (-) 816 WP_006580703.1 NAD(P)H-binding protein -
  H0S59_RS16925 (H0S59_16935) recG 3607754..3609799 (+) 2046 WP_004884596.1 ATP-dependent DNA helicase RecG -
  H0S59_RS16930 (H0S59_16940) comF 3609792..3610427 (+) 636 WP_031982346.1 ComF family protein Machinery gene
  H0S59_RS16935 (H0S59_16945) - 3610430..3610831 (-) 402 WP_033846993.1 NUDIX domain-containing protein -
  H0S59_RS16940 (H0S59_16950) - 3610846..3611427 (-) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  H0S59_RS16945 (H0S59_16955) - 3611585..3612598 (+) 1014 WP_002049699.1 CorA family divalent cation transporter -
  H0S59_RS16950 (H0S59_16960) - 3612673..3612960 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  H0S59_RS16955 (H0S59_16965) - 3612972..3613613 (-) 642 WP_002049753.1 phospholipid-binding protein MlaC -
  H0S59_RS16960 (H0S59_16970) - 3613640..3614323 (-) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H0S59_RS16965 (H0S59_16975) mlaE 3614323..3615099 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24628.85 Da        Isoelectric Point: 9.9089

>NTDB_id=467017 H0S59_RS16930 WP_031982346.1 3609792..3610427(+) (comF) [Acinetobacter nosocomialis strain WM98B]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=467017 H0S59_RS16930 WP_031982346.1 3609792..3610427(+) (comF) [Acinetobacter nosocomialis strain WM98B]
ATGTTTAAGTTGTTCAACCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAATCGCATAATTCAGCAGTTCAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAAGTCTTACAGCAAATAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGCCTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCTATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCACTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

96.209

100

0.962
  comF Acinetobacter baumannii D1279779

95.261

100

0.953