Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6J85_RS07670 Genome accession   NZ_CP069447
Coordinates   1597817..1598554 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_1255     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592817..1603554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J85_RS07640 (I6J85_07640) yfiL 1592976..1593341 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  I6J85_RS07645 (I6J85_07645) aroF 1593551..1594621 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I6J85_RS07650 (I6J85_07650) tyrA 1594632..1595753 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6J85_RS07655 (I6J85_07655) pheA 1595796..1596956 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6J85_RS07660 (I6J85_07660) pheL 1597055..1597102 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I6J85_RS07665 (I6J85_07665) raiA 1597206..1597547 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6J85_RS07670 (I6J85_07670) comL 1597817..1598554 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6J85_RS07675 (I6J85_07675) rluD 1598689..1599669 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6J85_RS07680 (I6J85_07680) yfiH 1599666..1600397 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  I6J85_RS07685 (I6J85_07685) clpC 1600527..1603100 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=466920 I6J85_RS07670 WP_000197686.1 1597817..1598554(-) (comL) [Escherichia coli strain FDAARGOS_1255]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=466920 I6J85_RS07670 WP_000197686.1 1597817..1598554(-) (comL) [Escherichia coli strain FDAARGOS_1255]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376