Detailed information NTG0466864

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H0H12_RS25665
• Genome accession: NZ_CP059052
• Coordinates: 5626738..5627604 (+)
• Length: 288 a.a.
• NCBI ID: WP_180688884.1
• Uniprot ID: -
• Organism: Pseudomonas putida strain BS3701
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5621738..5632604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0H12_RS25640 (H0H12_25640)	-	5622441..5622830 (-)	390	WP_180688882.1	hypothetical protein	-
H0H12_RS25645 (H0H12_25645)	-	5622823..5624223 (-)	1401	WP_180688883.1	PAAR domain-containing protein	-
H0H12_RS30685	-	5624342..5624500 (-)	159	Protein_5129	Fic family protein	-
H0H12_RS25655 (H0H12_25655)	-	5624900..5625310 (-)	411	WP_012051131.1	pilin	-
H0H12_RS25660 (H0H12_25660)	-	5625527..5626735 (+)	1209	WP_104886725.1	type II secretion system F family protein	-
H0H12_RS25665 (H0H12_25665)	pilD	5626738..5627604 (+)	867	WP_180688884.1	A24 family peptidase	Machinery gene
H0H12_RS25670 (H0H12_25670)	coaE	5627604..5628227 (+)	624	WP_004575721.1	dephospho-CoA kinase	-
H0H12_RS25675 (H0H12_25675)	yacG	5628224..5628424 (+)	201	WP_003247540.1	DNA gyrase inhibitor YacG	-
H0H12_RS25680 (H0H12_25680)	-	5628612..5629319 (-)	708	WP_014859437.1	energy-coupling factor ABC transporter permease	-
H0H12_RS25685 (H0H12_25685)	-	5629406..5629837 (+)	432	WP_012051128.1	hypothetical protein	-
H0H12_RS25690 (H0H12_25690)	-	5629893..5630522 (+)	630	WP_003247546.1	DUF1780 domain-containing protein	-
H0H12_RS25695 (H0H12_25695)	-	5630655..5630828 (+)	174	WP_008091951.1	DUF3094 domain-containing protein	-
H0H12_RS25700 (H0H12_25700)	-	5630913..5632208 (+)	1296	WP_003247549.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31834.88 Da
• Isoelectric Point: 7.9101

>NTDB_id=466864 H0H12_RS25665 WP_180688884.1 5626738..5627604(+) (pilD) [Pseudomonas putida strain BS3701]
MTLWAFLAEQPAYFLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHARFDLCLPASRCPHCAHRIRA
WENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDADHQLLPDVLVL
PTMWLGLIVNAFGIHVPLADALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRFRRHALGTAIPFGPYLAIAGWIAVLWGDEIYASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=466864 H0H12_RS25665 WP_180688884.1 5626738..5627604(+) (pilD) [Pseudomonas putida strain BS3701]
ATGACTTTATGGGCTTTTCTGGCTGAACAGCCAGCGTATTTCCTCACCCTTGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTTATCAACGTGCTGGTTTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC
TGCCGACCACGCAGCACGCGCGTTTCGACCTGTGCCTGCCCGCCTCCCGGTGCCCACACTGCGCACACCGGATTCGTGCG
TGGGAGAACATTCCAGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTA
CCCGGTAGTGGAAGTGGCCAGCGCGCTGCTGTCGCTGGTAGTGGCCTGGCGCTTCGGCGCTTCGGTAGAGGCGTTGCTGG
CGTTGCCGCTGACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCGGACCACCAGCTGCTGCCGGATGTGCTGGTGCTG
CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGCATCCATGTGCCCCTGGCCGATGCCCTGTGGGGCGCAGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTTGTTGGCCTGTGCCTGCTGCGTTTTCGCCGGCATGCCTTGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.986	96.181	0.5
pilD	Acinetobacter baumannii D1279779	48.929	97.222	0.476
pilD	Acinetobacter nosocomialis M2	48.214	97.222	0.469
pilD	Vibrio campbellii strain DS40M4	48.551	95.833	0.465
pilD	Neisseria gonorrhoeae MS11	48.327	93.403	0.451