Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SLUG_RS04745 Genome accession   NC_017353
Coordinates   1016101..1016502 (+) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis N920143     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1011101..1021502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLUG_RS04720 (SLUG_09640) - 1012386..1012787 (+) 402 WP_002461226.1 F0F1 ATP synthase subunit epsilon -
  SLUG_RS04725 (SLUG_09650) - 1012925..1013158 (+) 234 WP_002478965.1 DUF1146 family protein -
  SLUG_RS04730 (SLUG_09660) murA 1013322..1014587 (+) 1266 WP_002461223.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SLUG_RS04735 (SLUG_09670) fabZ 1014624..1015064 (+) 441 WP_002461222.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SLUG_RS04740 (SLUG_09680) - 1015460..1015912 (-) 453 WP_002478966.1 YwpF-like family protein -
  SLUG_RS04745 (SLUG_09690) ssb 1016101..1016502 (+) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  SLUG_RS04750 (SLUG_09700) - 1016981..1017688 (+) 708 WP_002478967.1 transglycosylase family protein -
  SLUG_RS04755 (SLUG_09710) tenA 1018101..1018778 (+) 678 WP_002461217.1 thiaminase II -
  SLUG_RS04760 (SLUG_09720) thiD 1018783..1019604 (+) 822 WP_002478968.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SLUG_RS04765 (SLUG_09730) thiM 1019597..1020385 (+) 789 WP_002478969.1 hydroxyethylthiazole kinase -
  SLUG_RS04770 (SLUG_09740) thiE 1020388..1021026 (+) 639 WP_002478970.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=46674 SLUG_RS04745 WP_002461219.1 1016101..1016502(+) (ssb) [Staphylococcus lugdunensis N920143]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=46674 SLUG_RS04745 WP_002461219.1 1016101..1016502(+) (ssb) [Staphylococcus lugdunensis N920143]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACCAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684

Multiple sequence alignment