Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MS7_RS11335 Genome accession   NC_017351
Coordinates   2199644..2200039 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus 11819-97     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2194644..2205039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS7_RS11305 (MS7_2107) thiE 2195106..2195747 (-) 642 WP_000483164.1 thiamine phosphate synthase -
  MS7_RS11310 (MS7_2108) thiM 2195749..2196540 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  MS7_RS11315 (MS7_2109) thiD 2196524..2197354 (-) 831 WP_000594942.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MS7_RS11320 (MS7_2110) tenA 2197347..2198036 (-) 690 WP_000396062.1 thiaminase II -
  MS7_RS11330 (MS7_2112) sceD 2198560..2199255 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  MS7_RS11335 (MS7_2113) ssb 2199644..2200039 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  MS7_RS11340 (MS7_2114) - 2200233..2200673 (+) 441 WP_000846746.1 YwpF-like family protein -
  MS7_RS11345 (MS7_2115) fabZ 2200731..2201171 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MS7_RS11350 (MS7_2116) murA 2201205..2202470 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MS7_RS11355 (MS7_2117) - 2202581..2202814 (-) 234 WP_000384523.1 DUF1146 family protein -
  MS7_RS11360 - 2202946..2203038 (-) 93 WP_031864518.1 hypothetical protein -
  MS7_RS11365 (MS7_2118) - 2203408..2203812 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=46663 MS7_RS11335 WP_000932694.1 2199644..2200039(-) (ssb) [Staphylococcus aureus subsp. aureus 11819-97]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=46663 MS7_RS11335 WP_000932694.1 2199644..2200039(-) (ssb) [Staphylococcus aureus subsp. aureus 11819-97]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment