Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H0N27_RS09545 Genome accession   NZ_CP059039
Coordinates   2057152..2057532 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2052152..2062532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N27_RS09515 (H0N27_09520) tadA 2052271..2052774 (-) 504 WP_031946509.1 tRNA adenosine(34) deaminase TadA -
  H0N27_RS09520 (H0N27_09525) - 2052781..2053905 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  H0N27_RS09525 (H0N27_09530) ung 2053902..2054615 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  H0N27_RS09530 (H0N27_09535) - 2054666..2055262 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  H0N27_RS09535 (H0N27_09540) gspK 2055492..2056451 (-) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  H0N27_RS09540 (H0N27_09545) xcpW 2056451..2057152 (-) 702 WP_032025534.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H0N27_RS09545 (H0N27_09550) xcpV 2057152..2057532 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  H0N27_RS09550 (H0N27_09555) - 2057522..2058076 (-) 555 WP_000841371.1 type II secretion system protein -
  H0N27_RS09555 (H0N27_09560) - 2058086..2058694 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H0N27_RS09560 (H0N27_09565) - 2058732..2059505 (-) 774 WP_000497302.1 TatD family hydrolase -
  H0N27_RS09565 (H0N27_09570) - 2059523..2059864 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  H0N27_RS09570 (H0N27_09575) - 2059876..2060856 (-) 981 WP_004747384.1 DNA polymerase III, delta' subunit -
  H0N27_RS09575 (H0N27_09580) kdsB 2060868..2061629 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=466560 H0N27_RS09545 WP_000836911.1 2057152..2057532(-) (xcpV) [Acinetobacter baumannii strain A118]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=466560 H0N27_RS09545 WP_000836911.1 2057152..2057532(-) (xcpV) [Acinetobacter baumannii strain A118]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1