NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	H0N27_RS09540	Genome accession	NZ_CP059039
Coordinates	2056451..2057152 (-)	Length	233 a.a.
NCBI ID	WP_032025534.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain A118
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2051451..2062152

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0N27_RS09510 (H0N27_09515)	-	2051758..2052201 (-)	444	WP_001246675.1	SRPBCC family protein	-
H0N27_RS09515 (H0N27_09520)	tadA	2052271..2052774 (-)	504	WP_031946509.1	tRNA adenosine(34) deaminase TadA	-
H0N27_RS09520 (H0N27_09525)	-	2052781..2053905 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
H0N27_RS09525 (H0N27_09530)	ung	2053902..2054615 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
H0N27_RS09530 (H0N27_09535)	-	2054666..2055262 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
H0N27_RS09535 (H0N27_09540)	gspK	2055492..2056451 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
H0N27_RS09540 (H0N27_09545)	xcpW	2056451..2057152 (-)	702	WP_032025534.1	type II secretion system minor pseudopilin GspJ	Machinery gene
H0N27_RS09545 (H0N27_09550)	xcpV	2057152..2057532 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
H0N27_RS09550 (H0N27_09555)	-	2057522..2058076 (-)	555	WP_000841371.1	type II secretion system protein	-
H0N27_RS09555 (H0N27_09560)	-	2058086..2058694 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
H0N27_RS09560 (H0N27_09565)	-	2058732..2059505 (-)	774	WP_000497302.1	TatD family hydrolase	-
H0N27_RS09565 (H0N27_09570)	-	2059523..2059864 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
H0N27_RS09570 (H0N27_09575)	-	2059876..2060856 (-)	981	WP_004747384.1	DNA polymerase III, delta' subunit	-
H0N27_RS09575 (H0N27_09580)	kdsB	2060868..2061629 (-)	762	WP_000680696.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26656.61 Da Isoelectric Point: 9.5501

                                >NTDB_id=466559 H0N27_RS09540 WP_032025534.1 2056451..2057152(-) (xcpW) [Acinetobacter baumannii strain A118]

MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLNQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=466559 H0N27_RS09540 WP_032025534.1 2056451..2057152(-) (xcpW) [Acinetobacter baumannii strain A118]

ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTACATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAATCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991

Detailed information NTG0466559