Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JQM34_RS06930 Genome accession   NZ_CP069427
Coordinates   1452927..1454024 (-) Length   365 a.a.
NCBI ID   WP_000266686.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1447927..1459024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS06915 (JQM34_0001410) - 1448391..1450013 (-) 1623 WP_000958788.1 ATP-binding cassette domain-containing protein -
  JQM34_RS06920 (JQM34_0001411) trpS 1450209..1451237 (+) 1029 WP_000165465.1 tryptophan--tRNA ligase -
  JQM34_RS06925 (JQM34_0001412) guaB 1451397..1452875 (+) 1479 WP_000073416.1 IMP dehydrogenase -
  JQM34_RS06930 (JQM34_0001413) recF 1452927..1454024 (-) 1098 WP_000266686.1 DNA replication/repair protein RecF Machinery gene
  JQM34_RS06935 (JQM34_0001414) yaaA 1454027..1454395 (-) 369 WP_000455876.1 S4 domain-containing protein YaaA -
  JQM34_RS06940 (JQM34_0001415) - 1454556..1455806 (+) 1251 WP_200370613.1 pitrilysin family protein -
  JQM34_RS06945 (JQM34_0001416) - 1455803..1457086 (+) 1284 WP_200370614.1 pitrilysin family protein -
  JQM34_RS06950 (JQM34_0001417) rodZ 1457122..1457943 (+) 822 WP_200370615.1 cytoskeleton protein RodZ -
  JQM34_RS06955 (JQM34_0001418) pgsA 1457954..1458499 (+) 546 WP_000712149.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41984.15 Da        Isoelectric Point: 9.4716

>NTDB_id=466536 JQM34_RS06930 WP_000266686.1 1452927..1454024(-) (recF) [Streptococcus oralis strain SF100]
MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIHFDNEQLHLSGLLQKKTSS
IPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQR
NTYLKSNQKIDETFLSVLDDQLIEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNFTNEEQLTSSFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITNESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFNIQSGKISVNQN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=466536 JQM34_RS06930 WP_000266686.1 1452927..1454024(-) (recF) [Streptococcus oralis strain SF100]
ATGTGGCTCCAACATTTAACAATTAAAACCTTTCGAAACTACAAAGAGGCAAAAATTGATTTCAATCCAAAATTAAATGT
CTTTCTAGGTCAAAATGCACAAGGAAAAACCAATATTCTAGAAGCAATCTATTTTTTAGCCTTAACACGTAGTCATCGGA
CTCGTACAGATAAAAATCTCATTCATTTTGATAACGAGCAACTCCATCTTTCTGGCTTGCTACAGAAGAAAACAAGCTCT
ATCCCTCTAGAAATTGATTTAACGCCAAAAGGGCGTGTGACTAAGGTCAATCACTTAAAACAAGCGCGCCTATCAGACTA
CATCGGACATATGAATGTTGTCCTCTTCGCACCTGAAGATCTCCAGCTAATTAAGGGAGCACCTTCTGTCCGTCGAAAAT
TTATAGACATCGAACTGGGACAAATTAAACCAATCTACTTGTCAGACTTGTCAAACTACAACCATATACTCAAGCAGAGA
AATACCTATCTAAAATCCAACCAGAAGATTGATGAAACATTTCTGTCAGTCTTAGATGATCAGTTAATAGAGTATGGTTG
TCGCGTTATAAAGCATCGGATAAAATTCATTAAAGACTTAGAGAAATTTGGCCAAAAAAAACACTTAGAAATTTCAAATA
AATTAGAAGAACTGTCAATATCTTATCAATCATCTGTCAACTTCACTAATGAAGAACAGCTAACAAGTTCCTTTAAAATT
GCTTTAGAGAAAAGCAGATCCAGAGACTTATTTAAAAAGAATACTGGTGTTGGTCCTCATCGAGATGATATTTCTTTTTA
TATCAATGGTATGGACGCTAGTTTTGGAAGCCAAGGTCAACATCGTAGTCTTGTTCTTTCTATCAAACTGGCAGAAATTG
AGCTAATGGAAAGTATTACCAACGAGTCTCCTATACTATTGCTTGATGATGTTATGAGCGAACTTGACAATACACGGCAA
CTAAAATTACTAGAAACCATTTCTCAATCTATCCAAACCTTTATCACAACAACAAGTTTAGACCACTTGCAAAATTTGCC
AGAAAATCTTAGTATCTTCAATATCCAAAGCGGTAAAATTTCTGTAAATCAAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

89.041

100

0.89
  recF Bacillus subtilis subsp. subtilis str. 168

45.109

100

0.455