Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   JQM34_RS05235 Genome accession   NZ_CP069427
Coordinates   1109060..1109692 (-) Length   210 a.a.
NCBI ID   WP_200370412.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1104060..1114692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS05220 (JQM34_0001062) recD/recD2/recDB 1104612..1106981 (+) 2370 WP_200370411.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JQM34_RS05225 (JQM34_0001063) tig 1107029..1108312 (-) 1284 WP_000116504.1 trigger factor -
  JQM34_RS05230 (JQM34_0001064) - 1108403..1109059 (-) 657 WP_084922096.1 DNA alkylation repair protein -
  JQM34_RS05235 (JQM34_0001065) vraR 1109060..1109692 (-) 633 WP_200370412.1 response regulator transcription factor Regulator
  JQM34_RS05240 (JQM34_0001066) - 1109703..1110701 (-) 999 WP_000744925.1 sensor histidine kinase -
  JQM34_RS05245 (JQM34_0001067) liaF 1110698..1111381 (-) 684 WP_204107783.1 cell wall-active antibiotics response protein LiaF -
  JQM34_RS05250 (JQM34_0001070) fni 1111512..1112512 (-) 1001 Protein_1046 type 2 isopentenyl-diphosphate Delta-isomerase -
  JQM34_RS05255 (JQM34_0001071) - 1112496..1113503 (-) 1008 WP_200370414.1 phosphomevalonate kinase -
  JQM34_RS05260 (JQM34_0001072) mvaD 1113490..1114443 (-) 954 WP_200370415.1 diphosphomevalonate decarboxylase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23601.21 Da        Isoelectric Point: 4.8943

>NTDB_id=466502 JQM34_RS05235 WP_200370412.1 1109060..1109692(-) (vraR) [Streptococcus oralis strain SF100]
MKILLVDDHEMVRLGLKSYFNLQDDVEVVGEAANGAQGIELALELRPDVIVMDIVMPEMNGIDATLAILKEWPEAKILIV
TSYLDNEKIMPVLNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIAKGY
ENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLVGQENF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=466502 JQM34_RS05235 WP_200370412.1 1109060..1109692(-) (vraR) [Streptococcus oralis strain SF100]
ATGAAAATTTTACTGGTAGATGACCATGAAATGGTCCGATTGGGCTTGAAAAGCTATTTTAATCTCCAAGACGATGTGGA
AGTTGTGGGCGAGGCTGCCAATGGGGCTCAAGGTATTGAGTTGGCCTTGGAACTGCGTCCAGATGTCATTGTCATGGATA
TTGTCATGCCTGAGATGAATGGAATTGATGCTACCTTGGCCATCCTCAAAGAATGGCCTGAAGCCAAGATTTTGATTGTG
ACCTCTTACCTAGACAATGAAAAAATCATGCCGGTCTTGAACGCGGGTGCCAAAGGTTATATGCTCAAGACTTCTAGTGC
AGACGAACTGCTTCATGCCGTCCGCAAGGTGGCTGCTGGAGAGCTTGCTATTGAACAAGAGGTCAGCAAGAAGGTCGAAT
ACCACCGTAATCATATGGAGCTTCATGAGGAGCTGACTGCGCGTGAGCGAGACGTGCTCCAACTCATCGCTAAGGGCTAC
GAAAATCAACGCATTGCAGATGAACTCTTCATCTCTCTCAAGACGGTCAAGACCCACGTGTCCAACATCCTAGCCAAGCT
TGAGGTCAGTGATCGCACCCAGGCTGCGGTCTATGCCTTTCAGCACCACTTGGTTGGGCAGGAGAACTTTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-115)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.632

99.524

0.524
  degU Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.405