Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PRL2021_RS00045 Genome accession   NZ_CP058996
Coordinates   11198..11716 (+) Length   172 a.a.
NCBI ID   WP_005721894.1    Uniprot ID   -
Organism   Lactobacillus crispatus strain PRL2021     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6198..16716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRL2021_RS00035 (PRL2021_0007) gyrA 8155..10635 (+) 2481 WP_005721040.1 DNA gyrase subunit A -
  PRL2021_RS00040 (PRL2021_0008) rpsF 10852..11148 (+) 297 WP_005721042.1 30S ribosomal protein S6 -
  PRL2021_RS00045 (PRL2021_0009) ssb 11198..11716 (+) 519 WP_005721894.1 single-stranded DNA-binding protein Machinery gene
  PRL2021_RS00050 (PRL2021_0010) rpsR 11744..11980 (+) 237 WP_003549366.1 30S ribosomal protein S18 -
  PRL2021_RS00055 (PRL2021_0011) - 12144..14165 (+) 2022 WP_202726815.1 DHH family phosphoesterase -
  PRL2021_RS00060 (PRL2021_0012) rplI 14177..14632 (+) 456 WP_005721048.1 50S ribosomal protein L9 -
  PRL2021_RS00065 (PRL2021_0013) dnaB 14652..16043 (+) 1392 WP_005721050.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18679.21 Da        Isoelectric Point: 4.7317

>NTDB_id=466479 PRL2021_RS00045 WP_005721894.1 11198..11716(+) (ssb) [Lactobacillus crispatus strain PRL2021]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNASSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=466479 PRL2021_RS00045 WP_005721894.1 11198..11716(+) (ssb) [Lactobacillus crispatus strain PRL2021]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTAGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.143

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.705

100

0.529