Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JSW75_RS06580 Genome accession   NZ_CP069386
Coordinates   1360929..1361666 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain XH1815     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1355929..1366666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSW75_RS06565 (JSW75_06525) clpC 1356383..1358956 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  JSW75_RS06570 (JSW75_06530) yfiH 1359086..1359817 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  JSW75_RS06575 (JSW75_06535) rluD 1359814..1360794 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JSW75_RS06580 (JSW75_06540) comL 1360929..1361666 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JSW75_RS06585 (JSW75_06545) raiA 1361937..1362278 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JSW75_RS06590 (JSW75_06550) pheL 1362382..1362429 (+) 48 WP_010723158.1 phe operon leader peptide -
  JSW75_RS06595 (JSW75_06555) pheA 1362528..1363688 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JSW75_RS06600 (JSW75_06560) tyrA 1363731..1364852 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JSW75_RS06605 (JSW75_06565) aroF 1364863..1365933 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JSW75_RS06610 (JSW75_06570) yfiL 1366143..1366508 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=466391 JSW75_RS06580 WP_000197686.1 1360929..1361666(+) (comL) [Escherichia coli strain XH1815]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=466391 JSW75_RS06580 WP_000197686.1 1360929..1361666(+) (comL) [Escherichia coli strain XH1815]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376