Detailed information NTG0466371

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: JQ490_RS11765
• Genome accession: NZ_CP069378
• Coordinates: 2369214..2370290 (-)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2364214..2375290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQ490_RS11745 (JQ490_11745)	galE	2366244..2367224 (+)	981	WP_010906245.1	UDP-glucose 4-epimerase GalE	-
JQ490_RS11750 (JQ490_11750)	-	2367347..2368291 (+)	945	WP_010906244.1	alpha/beta hydrolase	-
JQ490_RS11755 (JQ490_11755)	-	2368304..2368681 (-)	378	WP_010906243.1	MerR family transcriptional regulator	-
JQ490_RS11760 (JQ490_11760)	-	2368759..2369127 (+)	369	WP_004254740.1	carboxymuconolactone decarboxylase family protein	-
JQ490_RS11765 (JQ490_11765)	recF	2369214..2370290 (-)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
JQ490_RS11770 (JQ490_11770)	yaaA	2370290..2370652 (-)	363	WP_004254746.1	S4 domain-containing protein YaaA	-
JQ490_RS11775 (JQ490_11775)	-	2370850..2372136 (+)	1287	WP_021214872.1	pitrilysin family protein	-
JQ490_RS11780 (JQ490_11780)	-	2372126..2373409 (+)	1284	WP_191904765.1	pitrilysin family protein	-
JQ490_RS11785 (JQ490_11785)	-	2373621..2374517 (+)	897	WP_010906239.1	RodZ family helix-turn-helix domain-containing protein	-
JQ490_RS11790 (JQ490_11790)	pgsA	2374558..2375130 (+)	573	WP_010906238.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=466371 JQ490_RS11765 WP_010906242.1 2369214..2370290(-) (recF) [Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=466371 JQ490_RS11765 WP_010906242.1 2369214..2370290(-) (recF) [Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447