Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   JQ490_RS08075 Genome accession   NZ_CP069378
Coordinates   1642694..1643506 (+) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1637694..1648506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ490_RS08050 (JQ490_08050) yaaT 1637747..1638529 (-) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  JQ490_RS08055 (JQ490_08055) - 1638581..1639441 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  JQ490_RS08060 (JQ490_08060) tmk 1639574..1640209 (-) 636 WP_003131575.1 dTMP kinase -
  JQ490_RS08065 (JQ490_08065) yycF 1640387..1641088 (+) 702 WP_003131580.1 response regulator YycF -
  JQ490_RS08070 (JQ490_08070) vicK 1641081..1642523 (+) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  JQ490_RS08075 (JQ490_08075) vicX 1642694..1643506 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  JQ490_RS08080 (JQ490_08080) groL 1643552..1645180 (-) 1629 WP_003131585.1 chaperonin GroEL -
  JQ490_RS08085 (JQ490_08085) groES 1645268..1645552 (-) 285 WP_003131589.1 co-chaperone GroES -
  JQ490_RS08090 (JQ490_08090) - 1645672..1646061 (-) 390 WP_010905314.1 single-stranded DNA-binding protein -
  JQ490_RS08095 (JQ490_08095) - 1646151..1647491 (-) 1341 WP_021214845.1 FAD-dependent oxidoreductase -
  JQ490_RS08100 (JQ490_08100) ytpR 1647654..1648280 (-) 627 WP_003131594.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=466333 JQ490_RS08075 WP_003131583.1 1642694..1643506(+) (vicX) [Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=466333 JQ490_RS08075 WP_003131583.1 1642694..1643506(+) (vicX) [Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685