Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   MS7_RS02850 Genome accession   NC_017351
Coordinates   572381..572950 (+) Length   189 a.a.
NCBI ID   WP_000872865.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus 11819-97     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 567381..577950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS7_RS02825 (MS7_0518) cysE 568594..569241 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  MS7_RS02830 (MS7_0519) cysS 569225..570625 (+) 1401 WP_000631957.1 cysteine--tRNA ligase -
  MS7_RS02835 (MS7_0520) - 570618..571022 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  MS7_RS02840 (MS7_0521) rlmB 571030..571776 (+) 747 WP_000390329.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MS7_RS02845 (MS7_0522) - 571776..572300 (+) 525 WP_000664738.1 NYN domain-containing protein -
  MS7_RS02850 (MS7_0523) sigH 572381..572950 (+) 570 WP_000872865.1 RNA polymerase sigma factor Regulator
  MS7_RS14815 (MS7_0524) rpmG 573065..573208 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  MS7_RS02855 (MS7_0525) secE 573264..573446 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  MS7_RS02860 (MS7_0526) nusG 573459..574007 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  MS7_RS02865 (MS7_0527) rplK 574188..574610 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  MS7_RS02870 (MS7_0528) rplA 574818..575510 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  MS7_RS02875 (MS7_0529) rplJ 575782..576282 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  MS7_RS02880 (MS7_0530) rplL 576325..576693 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  MS7_RS02885 (MS7_0531) - 576868..577476 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23067.87 Da        Isoelectric Point: 9.6015

>NTDB_id=46630 MS7_RS02850 WP_000872865.1 572381..572950(+) (sigH) [Staphylococcus aureus subsp. aureus 11819-97]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLKPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKTI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=46630 MS7_RS02850 WP_000872865.1 572381..572950(+) (sigH) [Staphylococcus aureus subsp. aureus 11819-97]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTAAAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AACGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968

Multiple sequence alignment