Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZF13_RS00040 Genome accession   NZ_CP058967
Coordinates   10196..10798 (+) Length   200 a.a.
NCBI ID   WP_065080092.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain DW12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5196..15798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZF13_RS00030 (HZF13_00030) gyrA 6676..9237 (+) 2562 WP_003641633.1 DNA gyrase subunit A -
  HZF13_RS00035 (HZF13_00035) rpsF 9860..10159 (+) 300 WP_003637271.1 30S ribosomal protein S6 -
  HZF13_RS00040 (HZF13_00040) ssb 10196..10798 (+) 603 WP_065080092.1 single-stranded DNA-binding protein Machinery gene
  HZF13_RS00045 (HZF13_00045) rpsR 10837..11073 (+) 237 WP_003641635.1 30S ribosomal protein S18 -
  HZF13_RS00050 (HZF13_00050) - 11254..13266 (+) 2013 WP_003643610.1 DHH family phosphoesterase -
  HZF13_RS00055 (HZF13_00055) rplI 13279..13731 (+) 453 WP_003641637.1 50S ribosomal protein L9 -
  HZF13_RS00060 (HZF13_00060) dnaB 13747..15171 (+) 1425 WP_003641638.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21760.17 Da        Isoelectric Point: 4.7453

>NTDB_id=466212 HZF13_RS00040 WP_065080092.1 10196..10798(+) (ssb) [Lactiplantibacillus plantarum strain DW12]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQFANGGSGNNNYNNGNSNYNNNNNGYSNQGQNAAPQQSSANNNNPFGN
GNTGNASSAAPSSSANNNNQADPFANNGDQIDISDDDLPF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=466212 HZF13_RS00040 WP_065080092.1 10196..10798(+) (ssb) [Lactiplantibacillus plantarum strain DW12]
ATGATTAACCGTACAATTCTTGTTGGCCGACTGACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACGTTCACTATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTCATTAGTTGCGTCATTT
GGCGTAAAGCTGCTGAAAATTTTGCGAACTTTACTCATAAAGGTTCACTTGTTGGTATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGTGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCATTATTAGAATCACGGGC
AGAGTCTGAACGTCATCAGTTTGCCAATGGTGGTAGTGGTAATAACAATTACAACAATGGTAATTCGAATTACAACAACA
ATAATAATGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAATAACCCATTTGGTAAT
GGTAATACTGGTAATGCTAGCAGTGCGGCACCATCAAGCAGTGCTAACAACAATAATCAGGCTGACCCATTCGCTAATAA
TGGCGATCAAATTGATATCTCGGATGATGATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.5

100

0.545